Genomic Tools for Customized Recovery and Detection of Foodborne Shiga Toxigenic Escherichia coli
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genomic Tools for Customized Recovery and Detection of Foodborne Shiga Toxigenic Escherichia coli
Authors
Keywords
-
Journal
JOURNAL OF FOOD PROTECTION
Volume 79, Issue 12, Pages 2066-2077
Publisher
International Association for Food Protection
Online
2016-12-02
DOI
10.4315/0362-028x.jfp-16-220
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database
- (2016) Ying Yang et al. BIOINFORMATICS
- kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome: Table 1
- (2015) Shea N Gardner et al. BIOINFORMATICS
- WGS accurately predicts antimicrobial resistance inEscherichia coli
- (2015) Gregory H. Tyson et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- PCR for the Specific Detection of an Escherichia coli O157:H7 Laboratory Control Strain
- (2015) MICHAEL KNOWLES et al. JOURNAL OF FOOD PROTECTION
- GeneSippr: A Rapid Whole-Genome Approach for the Identification and Characterization of Foodborne Pathogens such as Priority Shiga Toxigenic Escherichia coli
- (2015) Dominic Lambert et al. PLoS One
- Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data
- (2015) Will Rowe et al. PLoS One
- Complete sequence of multidrug resistance p9134 plasmid and its variants including natural recombinant with the virulence plasmid of Salmonella serovar Typhimurium
- (2014) Tereza Kubasova et al. PLASMID
- The Comprehensive Antibiotic Resistance Database
- (2013) Andrew G. McArthur et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
- (2013) Sushim Kumar Gupta et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Method for the Detection of Priority Shiga Toxin–Producing Escherichia coli in Beef Trim
- (2013) GEORGE HUSZCZYNSKI et al. JOURNAL OF FOOD PROTECTION
- Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
- (2012) Jian Ye et al. BMC BIOINFORMATICS
- Distribution of class 1 integrons among enteropathogenic Escherichia coli
- (2012) S. Najibi et al. CANADIAN JOURNAL OF MICROBIOLOGY
- Evolution of a multiple antibiotic resistance region in IncHI1 plasmids: reshaping resistance regions in situ
- (2012) A. K. Cain et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Polyester Cloth–Based Hybridization Array System for Identification of Enterohemorrhagic Escherichia coli Serogroups O26, O45, O103, O111, O121, O145, and O157
- (2012) BURTON W. BLAIS et al. JOURNAL OF FOOD PROTECTION
- Development of a Method for the Detection of Verotoxin-Producing Escherichia coli in Food
- (2012) ALEXANDER GILL et al. JOURNAL OF FOOD PROTECTION
- New integron gene arrays from multiresistant clinical isolates of members of the Enterobacteriaceae and Pseudomonas aeruginosa from hospitals in Malaysia
- (2012) S.-B. Kor et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
- (2012) K. A. Jolley et al. MICROBIOLOGY-SGM
- Regional Dissemination of a Trimethoprim-Resistance Gene Cassette via a Successful Transposable Element
- (2012) Amy S. Labar et al. PLoS One
- Quake: quality-aware detection and correction of sequencing errors
- (2012) David R Kelley et al. GENOME BIOLOGY
- Prevalence and Characterization of Non-O157 Shiga Toxin-ProducingEscherichia coliIsolates from Commercial Ground Beef in the United States
- (2011) Joseph M. Bosilevac et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Distribution of the blaTEM gene and blaTEM-containing transposons in commensal Escherichia coli
- (2011) J. K. Bailey et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany
- (2011) David A. Rasko et al. NEW ENGLAND JOURNAL OF MEDICINE
- A Requirement of TolC and MDR Efflux Pumps for Acid Adaptation and GadAB Induction in Escherichia coli
- (2011) Kari N. W. Deininger et al. PLoS One
- Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
- (2010) Rafael Szczepanowski et al. JOURNAL OF BIOTECHNOLOGY
- Genetic identity of aminoglycoside-resistance genes in Escherichia coli isolates from human and animal sources
- (2010) P. L. Ho et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Phenotypic and genotypic characterization of β-lactam resistance in Klebsiella pneumoniae isolated from swine
- (2010) Li-Kou Zou et al. VETERINARY MICROBIOLOGY
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains
- (2009) Magdalena Wiesner et al. BMC MICROBIOLOGY
- Novel CTX-M -lactamase genotype distribution and spread into multiple species of Enterobacteriaceae in Changsha, Southern China
- (2009) W. Liu et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Bacteremia Due to Acinetobacter Genomic Species 10
- (2009) S.-C. Kuo et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Class 1 integrons in multidrug-resistant non-typhoidal Salmonella enterica isolated in Spain between 2002 and 2004
- (2008) Irene Rodríguez et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- ARDB--Antibiotic Resistance Genes Database
- (2008) B. Liu et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now