Fight Fungi with Fungi: Antifungal Properties of the Amphibian Mycobiome

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

A genome Tree of Life for the Fungi kingdom

(2017) JaeJin Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Managing Amphibian Disease with Skin Microbiota

(2016) Douglas C. Woodhams et al.   TRENDS IN MICROBIOLOGY

Harnessing the Microbiome to Prevent Fungal Infections: Lessons from Amphibians

(2016) Jenifer B. Walke et al.   PLoS Pathogens

Using “Omics” and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases

(2016) Eria A. Rebollar et al.   Frontiers in Microbiology

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas)

(2015) Jordan G Kueneman et al.   ISME Journal

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Agricultural probiotics enter spotlight

(2015) Jeffrey L Fox   NATURE BIOTECHNOLOGY

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Widespread presence of the pathogenic fungus Batrachochytrium dendrobatidis in wild amphibian communities in Madagascar

(2015) Molly C. Bletz et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

(2014) Miklós Bálint et al.   MOLECULAR ECOLOGY

Stability of Microbiota Facilitated by Host Immune Regulation: Informing Probiotic Strategies to Manage Amphibian Disease

(2014) Denise Küng et al.   PLoS One

Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness

(2014) Douglas C. Woodhams et al.   PLoS One

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use

(2013) Molly C. Bletz et al.   ECOLOGY LETTERS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

A Non-Invasive Stress Assay Shows That Tadpole Populations Infected with Batrachochytrium dendrobatidis Have Elevated Corticosterone Levels

(2013) Caitlin R. Gabor et al.   PLoS One

The emerging world of the fungal microbiome

(2013) Gary B. Huffnagle et al.   TRENDS IN MICROBIOLOGY

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments

(2013) Jennifer L. Bowen et al.   Frontiers in Microbiology

Towards a Better Understanding of the Use of Probiotics for Preventing Chytridiomycosis in Panamanian Golden Frogs

(2012) Matthew H. Becker et al.   EcoHealth

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Microbial community composition in sediments resists perturbation by nutrient enrichment

(2011) Jennifer L Bowen et al.   ISME Journal

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Mycotic Flora of the Intestine and other Internal Organs of Certain Reptiles and Amphibians with Special Reference to Characterization of Basidiobolus Isolates: Die Pilzflora des Darmes und anderer innerer Organe von bestimmten Reptilien und Amphibien unt

(2010) H. C. Gugnani et al.   MYCOSES

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterially Produced Metabolite Violacein Is Associated with Survival of Amphibians Infected with a Lethal Fungus

(2009) M. H. Becker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the effects of the prebiotics (Bio-Mos® and β-1,3-D-glucan) and the customised probiotics (Pseudomonas synxantha and P. aeruginosa) on the culture of juvenile western king prawns (Penaeus latisulcatus Kishinouye, 1896)

(2009) Ngo Van Hai et al.   AQUACULTURE

Micrococcus luteus and Pseudomonas species as probiotics for promoting the growth performance and health of Nile tilapia, Oreochromis niloticus

(2009) Azza M. Abd El-Rhman et al.   FISH & SHELLFISH IMMUNOLOGY

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Influence of Arabidopsis thaliana accessions on rhizobacterial communities and natural variation in root exudates

(2009) Shirley A. Micallef et al.   JOURNAL OF EXPERIMENTAL BOTANY

Pathogenesis of Chytridiomycosis, a Cause of Catastrophic Amphibian Declines

(2009) J. Voyles et al.   SCIENCE

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Are we in the midst of the sixth mass extinction? A view from the world of amphibians

(2008) D. B. Wake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA