Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

(2017) Olov Svartström et al.   ISME Journal

A Bacteroidetes locus dedicated to fungal 1,6-β-glucan degradation: Unique substrate conformation drives specificity of the key endo-1,6-β-glucanase

(2017) Max J. Temple et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

(2017) Didier Ndeh et al.   NATURE

A New Functional Classification of Glucuronoyl Esterases by Peptide Pattern Recognition

(2017) Jane W. Agger et al.   Frontiers in Microbiology

A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep

(2017) Saad Al-Masaudi et al.   Frontiers in Microbiology

A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

(2017) Orlane Patrascu et al.   Scientific Reports

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils

(2016) Grace Pold et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Glucuronoyl Esterases: 10 Years after Discovery

(2016) Peter Biely   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

(2016) Keith Mewis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches

(2016) Diego Javier Jiménez et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin

(2016) Johan Larsbrink et al.   Biotechnology for Biofuels

Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

(2016) Lizi Bensoussan et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation and characterization of a novel glycosyl hydrolase family 74 (GH74) cellulase from the black goat rumen metagenomic library

(2016) Yun-Hee Song et al.   FOLIA MICROBIOLOGICA

Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus ofBacteroides ovatus

(2016) Viktoria Bågenholm et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides

(2016) Lior Artzi et al.   NATURE REVIEWS MICROBIOLOGY

Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome

(2016) Concetta De Santi et al.   PLoS One

Complexity of theRuminococcus flavefacienscellulosome reflects an expansion in glycan recognition

(2016) Immacolata Venditto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Substrate-Driven Convergence of the Microbial Community in Lignocellulose-Amended Enrichments of Gut Microflora from the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus)

(2016) Mabel T. Wong et al.   Frontiers in Microbiology

Composting-Like Conditions Are More Efficient for Enrichment and Diversity of Organisms Containing Cellulase-Encoding Genes than Submerged Cultures

(2016) Senta Heiss-Blanquet et al.   PLoS One

Bacteroides intestinalis DSM 17393, a member of the human colonic microbiome, upregulates multiple endoxylanases during growth on xylan

(2016) Kui Wang et al.   Scientific Reports

Positional preferences of acetyl esterases from different CE families towards acetylated 4-O-methyl glucuronic acid-substituted xylo-oligosaccharides

(2015) Klaus G Neumüller et al.   Biotechnology for Biofuels

Glucuronoyl esterases are active on the polymeric substrate methyl esterified glucuronoxylan

(2015) Peter Biely et al.   FEBS LETTERS

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Clostridium clariflavum : Key Cellulosome Players Are Revealed by Proteomic Analysis

(2015) Lior Artzi et al.   mBio

Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites

(2015) Karen Rossmassler et al.   Microbiome

Biomass Utilization by Gut Microbiomes

(2014) Bryan A. White et al.   Annual Review of Microbiology

A 1H NMR study of the specificity of α-l-arabinofuranosidases on natural and unnatural substrates

(2014) Vinciane Borsenberger et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

(2014) Nicolas Terrapon et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Characterization of All Family-9 Glycoside Hydrolases Synthesized by the Cellulosome-producing BacteriumClostridium cellulolyticum

(2014) Julie Ravachol et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes

(2014) M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk

(2014) Roberta M. O’Connor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites

(2013) Shaomei He et al.   PLoS One

Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production

(2012) Reeta Rani Singhania et al.   BIORESOURCE TECHNOLOGY

Fractional purification and bioconversion of hemicelluloses

(2012) Feng Peng et al.   BIOTECHNOLOGY ADVANCES

Use of substructure-specific carbohydrate binding modules to track changes in cellulose accessibility and surface morphology during the amorphogenesis step of enzymatic hydrolysis

(2012) Keith Gourlay et al.   Biotechnology for Biofuels

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils

(2012) Coralie Damon et al.   PLoS One

The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

(2012) Daniel van der Lelie et al.   PLoS One

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Evidence of cellulose metabolism by the giant panda gut microbiome

(2011) L. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Characterization of a Family GH5 Xylanase with Activity on Neutral Oligosaccharides and Evaluation as a Pulp Bleaching Aid

(2010) O. Gallardo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Microbial communities acclimate to recurring changes in soil redox potential status

(2010) Kristen M. DeAngelis et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular Cloning and Characterization of a β-l-Arabinobiosidase inBifidobacterium longumThat Belongs to a Novel Glycoside Hydrolase Family

(2010) Kiyotaka Fujita et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comparison of riparian plant community response to herbivory by beavers (Castor canadensis) and ungulates in Canada's boreal mixed-wood forest

(2009) Glynnis A. Hood et al.   FOREST ECOLOGY AND MANAGEMENT

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Domain evolution in the GH13 pullulanase subfamily with focus on the carbohydrate-binding module family 48

(2008) Martin Machovič et al.   BIOLOGIA

Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives

(2008) Raj Kumar et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY