What matters in chronic Burkholderia cenocepacia infection in cystic fibrosis: Insights from comparative genomics

Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs

(2017) Amy Huei-Yi Lee et al.   GENOME RESEARCH

Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex

(2017) E. Joel Loveridge et al.   JOURNAL OF BACTERIOLOGY

Within-Host Evolution of Burkholderia pseudomallei during Chronic Infection of Seven Australasian Cystic Fibrosis Patients

(2017) Linda T. Viberg et al.   mBio

Macrophages, but not neutrophils, are critical for proliferation of Burkholderia cenocepacia and ensuing host-damaging inflammation

(2017) Jennifer Mesureur et al.   PLoS Pathogens

Burkholderia cepacia Complex Regulation of Virulence Gene Expression: A Review

(2017) Sílvia Sousa et al.   Genes

Burkholderia cepacia complex in Serbian patients with cystic fibrosis: prevalence and molecular epidemiology

(2016) Z. V. Vasiljevic et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The Yin and Yang of copper during infection

(2016) Angelique N. Besold et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Cystic Fibrosis Lung Immunity: The Role of the Macrophage

(2016) Emanuela M. Bruscia et al.   Journal of Innate Immunity

Signaling by the heavy-metal sensor CusS involves rearranged helical interactions in specific transmembrane regions

(2016) Danny Ka Chun Fung et al.   MOLECULAR MICROBIOLOGY

Within-host evolution of bacterial pathogens

(2016) Xavier Didelot et al.   NATURE REVIEWS MICROBIOLOGY

Pseudomonas aeruginosa Evolutionary Adaptation and Diversification in Cystic Fibrosis Chronic Lung Infections

(2016) Craig Winstanley et al.   TRENDS IN MICROBIOLOGY

Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection

(2016) Inês N. Silva et al.   mSystems

Multilocus sequence analysis reveals high genetic diversity in clinical isolates of Burkholderia cepacia complex from India

(2016) Vikas Gautam et al.   Scientific Reports

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

(2015) Jane Hawkey et al.   BMC GENOMICS

Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients

(2015) Rasmus Lykke Marvig et al.   BMC MICROBIOLOGY

Intracellular survival of Burkholderia cepacia complex in phagocytic cells

(2015) Miguel A. Valvano   CANADIAN JOURNAL OF MICROBIOLOGY

The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia

(2015) Marcus M. Dillon et al.   GENETICS

The Role of Copper and Zinc Toxicity in Innate Immune Defense against Bacterial Pathogens

(2015) Karrera Y. Djoko et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gene Expression Profiling of Burkholderia cenocepacia at the Time of Cepacia Syndrome: Loss of Motility as a Marker of Poor Prognosis?

(2015) Lucie Kalferstova et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons

(2015) Alexandra Gennaris et al.   NATURE

Genomic perspectives on the evolution and spread of bacterial pathogens

(2015) Stephen D. Bentley et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Variability of the Order Burkholderiales Representatives in the Healthcare Units

(2015) Olga L. Voronina et al.   Biomed Research International

The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia

(2015) Marcus M. Dillon et al.   GENETICS

Hypermutation in Burkholderia cepacia complex is mediated by DNA mismatch repair inactivation and is highly prevalent in cystic fibrosis chronic respiratory infection

(2014) Pablo Martina et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli

(2014) C. Raeside et al.   mBio

Catalase in peroxidase clothing: Interdependent cooperation of two cofactors in the catalytic versatility of KatG

(2013) Olive J. Njuma et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Metal ions in macrophage antimicrobial pathways: emerging roles for zinc and copper

(2013) Sian L. Stafford et al.   BIOSCIENCE REPORTS

Postgenomic analysis of bacterial pathogens repertoire reveals genome reduction rather than virulence factors

(2013) V. Merhej et al.   Briefings in Functional Genomics

The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia

(2013) Andrea M Sass et al.   ISME Journal

X-ray Crystal Structure ofEscherichia coliRNA Polymerase σ70Holoenzyme

(2013) Katsuhiko S. Murakami   JOURNAL OF BIOLOGICAL CHEMISTRY

Novel diagnostic PCR assay for Burkholderia cenocepacia epidemic strain ST32 and its utility in monitoring infection in cystic fibrosis patients

(2013) Klara Dedeckova et al.   Journal of Cystic Fibrosis

Role of Burkholderia cenocepacia afcE and afcF genes in determining lipid-metabolism-associated phenotypes

(2013) S. Subramoni et al.   MICROBIOLOGY-SGM

Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures

(2013) Tami D Lieberman et al.   NATURE GENETICS

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Insertion sequence evolutionary patterns highlight convergent genetic inactivations and recent genomic island acquisitions among epidemic Burkholderia cenocepacia

(2011) A. Graindorge et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid

(2011) K. Agnoli et al.   MOLECULAR MICROBIOLOGY

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

(2011) Tami D Lieberman et al.   NATURE GENETICS

Copper resistance is essential for virulence of Mycobacterium tuberculosis

(2011) F. Wolschendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification and identification of the Burkholderia cepacia complex: Past, present and future

(2011) Peter Vandamme et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Pathogenicity, virulence factors, and strategies to fight against Burkholderia cepacia complex pathogens and related species

(2010) Jorge H. Leitão et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Burkholderia cenocepacia in cystic fibrosis: epidemiology and molecular mechanisms of virulence

(2010) P. Drevinek et al.   CLINICAL MICROBIOLOGY AND INFECTION

A Decade of Burkholderia cenocepacia Virulence Determinant Research

(2010) S. A. Loutet et al.   INFECTION AND IMMUNITY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

The Early Stage of Bacterial Genome-Reductive Evolution in the Host

(2010) Han Song et al.   PLoS Pathogens

Structural Insight into Partner Specificity and Phosphoryl Transfer in Two-Component Signal Transduction

(2009) Patricia Casino et al.   CELL

Oxidative Stress ofBurkholderia cenocepaciaInduces Insertion Sequence-Mediated Genomic Rearrangements That Interfere with Macrorestriction-Based Genotyping

(2009) Pavel Drevinek et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Pulmonary Complications of Cystic Fibrosis

(2009) Patrick A Flume   Respiratory Care

The Burkholderia Genome Database: facilitating flexible queries and comparative analyses

(2008) G. L. Winsor et al.   BIOINFORMATICS

The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients

(2008) M. T. G. Holden et al.   JOURNAL OF BACTERIOLOGY