Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli

Metabolic Erosion Primarily Through Mutation Accumulation, and Not Tradeoffs, Drives Limited Evolution of Substrate Specificity in Escherichia coli

(2014) Nicholas Leiby et al.   PLOS BIOLOGY

A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli

(2013) Ram P Maharjan et al.   BMC GENOMICS

The Evolution of Genomic Instability in the Obligate Endosymbionts of Whiteflies

(2013) Daniel B. Sloan et al.   Genome Biology and Evolution

Regulated DNA rearrangement during sporulation inBacillus weihenstephanensis KBAB4

(2013) Kimihiro Abe et al.   MOLECULAR MICROBIOLOGY

Long-Term Dynamics of Adaptation in Asexual Populations

(2013) M. J. Wiser et al.   SCIENCE

Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment

(2012) Martin H. Rau et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative Analysis of the First Complete Enterococcus faecium Genome

(2012) M. M. C. Lam et al.   JOURNAL OF BACTERIOLOGY

Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

New insights into bacterial adaptation through in vivo and in silico experimental evolution

(2012) Thomas Hindré et al.   NATURE REVIEWS MICROBIOLOGY

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

An Insertion Sequence-Dependent Plasmid Rearrangement in Aeromonas salmonicida Causes the Loss of the Type Three Secretion System

(2012) Katherine H. Tanaka et al.   PLoS One

Genome-Wide Detection of Spontaneous Chromosomal Rearrangements in Bacteria

(2012) Song Sun et al.   PLoS One

Sequence Features Contributing to Chromosomal Rearrangements in Neisseria gonorrhoeae

(2012) Russell Spencer-Smith et al.   PLoS One

Coordinated phenotype switching with large-scale chromosome flip-flop inversion observed in bacteria

(2012) L. Cui et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

(2012) S. Wielgoss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Unique Chromosomal Rearrangement in the Cryptococcus neoformans var. grubii Type Strain Enhances Key Phenotypes Associated with Virulence

(2012) C. A. Morrow et al.   mBio

Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations

(2012) Ming-Chun Lee et al.   PLoS Genetics

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics

(2011) Richard T Okinaka et al.   BMC GENOMICS

Replication initiation at the Escherichia coli chromosomal origin

(2011) Jon M Kaguni   CURRENT OPINION IN CHEMICAL BIOLOGY

Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes

(2011) Peter C. Turner et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Insertion Sequence-Driven Evolution of Escherichia coli in Chemostats

(2011) Joël Gaffé et al.   JOURNAL OF MOLECULAR EVOLUTION

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli

(2011) Sébastien Wielgoss et al.   G3-Genes Genomes Genetics

Global Chromosomal Structural Instability in a Subpopulation of Starving Escherichia coli Cells

(2011) Dongxu Lin et al.   PLoS Genetics

Insertion sequence elements in Cupriavidus metallidurans CH34: Distribution and role in adaptation

(2010) Kristel Mijnendonckx et al.   PLASMID

The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments

(2010) Paul J. Janssen et al.   PLoS One

Optical Mapping Reveals a Large Genetic Inversion between Two Methicillin-Resistant Staphylococcus aureus Strains

(2009) S. K. Shukla et al.   JOURNAL OF BACTERIOLOGY

Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E. coli B and K-12 Genomes

(2009) F. William Studier et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)

(2009) Haeyoung Jeong et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

Dynamics of Genome Rearrangement in Bacterial Populations

(2008) Aaron E. Darling et al.   PLoS Genetics