Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Automated ensemble assembly and validation of microbial genomes

(2014) Sergey Koren et al.   BMC BIOINFORMATICS

Evolutionary Origins of Human Herpes Simplex Viruses 1 and 2

(2014) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Case for the Ancient Origin of Coronaviruses

(2013) J. O. Wertheim et al.   JOURNAL OF VIROLOGY

Eastern Equine Encephalitis Virus — Old Enemy, New Threat

(2013) Philip M. Armstrong et al.   NEW ENGLAND JOURNAL OF MEDICINE

Mosquito-Host Interactions during and after an Outbreak of Equine Viral Encephalitis in Eastern Panama

(2013) Wayra G. Navia-Gine et al.   PLoS One

Alphaviruses: Population genetics and determinants of emergence

(2012) Scott C. Weaver et al.   ANTIVIRAL RESEARCH

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Venezuelan Equine Encephalitis Virus Activity in the Gulf Coast Region of Mexico, 2003–2010

(2012) A. Paige Adams et al.   PLoS Neglected Tropical Diseases

Endemic Venezuelan equine encephalitis in the Americas: hidden under the dengue umbrella

(2011) Patricia V Aguilar et al.   Future Virology

Genome-Scale Phylogeny of the Alphavirus Genus Suggests a Marine Origin

(2011) N. L. Forrester et al.   JOURNAL OF VIROLOGY

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Purifying Selection Can Obscure the Ancient Age of Viral Lineages

(2011) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes

(2011) K. A. Tsetsarkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequential Adaptive Mutations Enhance Efficient Vector Switching by Chikungunya Virus and Its Epidemic Emergence

(2011) Konstantin A. Tsetsarkin et al.   PLoS Pathogens

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Deep Sequencing Reveals Mixed Infection with 2009 Pandemic Influenza A (H1N1) Virus Strains and the Emergence of Oseltamivir Resistance

(2010) Elodie Ghedin et al.   JOURNAL OF INFECTIOUS DISEASES

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Encephalitic alphaviruses

(2009) Michele A. Zacks et al.   VETERINARY MICROBIOLOGY

Venezuelan Equine Encephalitis in Panama: Fatal Endemic Disease and Genetic Diversity of Etiologic Viral Strains

(2009) Evelia Quiroz et al.   PLoS Neglected Tropical Diseases

Genetic Characterization of Venezuelan Equine Encephalitis Virus from Bolivia, Ecuador and Peru: Identification of a New Subtype ID Lineage

(2009) Patricia V. Aguilar et al.   PLoS Neglected Tropical Diseases

Viral genome sequencing by random priming methods

(2008) Appolinaire Djikeng et al.   BMC GENOMICS

Advancing full length genome sequencing for human RNA viral pathogens

(2008) Appolinaire Djikeng et al.   Future Virology