Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations

(2017) Rafal Mostowy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Legionella pneumophila, armed to the hilt: justifying the largest arsenal of effectors in the bacterial world

(2016) Alexander W Ensminger   CURRENT OPINION IN MICROBIOLOGY

Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently

(2016) Sophia David et al.   GENOME RESEARCH

Evaluation of an Optimal Epidemiological Typing Scheme for Legionella pneumophila with Whole-Genome Sequence Data Using Validation Guidelines

(2016) Sophia David et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Probable Person-to-Person Transmission of Legionnaires’ Disease

(2016) Ana M. Correia et al.   NEW ENGLAND JOURNAL OF MEDICINE

Dynamics of genome change among Legionella species

(2016) Sandeep J. Joseph et al.   Scientific Reports

Genomic Investigation of a Legionellosis Outbreak in a Persistently Colonized Hotel

(2016) Leonor Sánchez-Busó et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Dense genomic sampling identifies highways of pneumococcal recombination

(2014) Claire Chewapreecha et al.   NATURE GENETICS

Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates

(2014) Leonor Sánchez-Busó et al.   NATURE GENETICS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

A structural comparison of lipopolysaccharide biosynthesis loci of Legionella pneumophila serogroup 1 strains

(2013) Markus Petzold et al.   BMC MICROBIOLOGY

Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing

(2013) Anthony P Underwood et al.   BMC MICROBIOLOGY

Homologous Recombination Drives Both Sequence Diversity and Gene Content Variation in Neisseria meningitidis

(2013) Ying Kong et al.   Genome Biology and Evolution

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

(2013) L. Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

A pilot study of rapid whole-genome sequencing for the investigation of aLegionellaoutbreak

(2013) Sandra Reuter et al.   BMJ Open

The Legionella pneumophila EnhC Protein Interferes with Immunostimulatory Muramyl Peptide Production to Evade Innate Immunity

(2012) Mingyu Liu et al.   Cell Host & Microbe

Whole-Genome Sequence of the Human Pathogen Legionella pneumophila Serogroup 12 Strain 570-CO-H

(2012) F. Amaro et al.   JOURNAL OF BACTERIOLOGY

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

(2012) Tanya Golubchik et al.   NATURE GENETICS

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

(2012) Simon R Harris et al.   NATURE GENETICS

A High-Resolution View of Genome-Wide Pneumococcal Transformation

(2012) Nicholas J. Croucher et al.   PLoS Pathogens

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Optimal enzymes for amplifying sequencing libraries

(2011) Michael A Quail et al.   NATURE METHODS

Detection of recombination events in bacterial genomes from large population samples

(2011) Pekka Marttinen et al.   NUCLEIC ACIDS RESEARCH

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones

(2011) Santiago Castillo-Ramírez et al.   PLoS Pathogens

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Legionella pneumophila Strain 130b Possesses a Unique Combination of Type IV Secretion Systems and Novel Dot/Icm Secretion System Effector Proteins

(2010) G. N. Schroeder et al.   JOURNAL OF BACTERIOLOGY

Evolutionary dynamics of Clostridium difficile over short and long time scales

(2010) M. He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection

(2010) N. Luisa Hiller et al.   PLoS Pathogens

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The TolC Protein of Legionella pneumophila Plays a Major Role in Multi-Drug Resistance and the Early Steps of Host Invasion

(2009) Mourad Ferhat et al.   PLoS One

Why do bacteria engage in homologous recombination?

(2009) Michiel Vos   TRENDS IN MICROBIOLOGY

Outer-membrane proteomic maps and surface-exposed proteins of Legionella pneumophila using cellular fractionation and fluorescent labelling

(2008) A. Khemiri et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species

(2008) C. Cazalet et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Adaptive value of sex in microbial pathogens

(2008) Richard E. Michod et al.   INFECTION GENETICS AND EVOLUTION

Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae

(2008) M. Brochet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands

(2007) Gernot Glöckner et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY