Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

Population subdivision and the detection of recombination in non-typable Haemophilus influenzae

(2012) T. R. Connor et al.   MICROBIOLOGY-SGM

Restricted Gene Flow among Hospital Subpopulations of Enterococcus faecium

(2012) R. J. L. Willems et al.   mBio

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

(2012) Santiago Castillo-Ramírez et al.   GENOME BIOLOGY

Bayesian semi-supervised classification of bacterial samples using MLST databases

(2011) Lu Cheng et al.   BMC BIOINFORMATICS

Population structure in the Neisseria, and the biological significance of fuzzy species

(2011) J. Corander et al.   Journal of the Royal Society Interface

In defence of model-based inference in phylogeography

(2010) MARK A. BEAUMONT et al.   MOLECULAR ECOLOGY

Assigning strains to bacterial species via the internet

(2009) Cynthia J Bishop et al.   BMC BIOLOGY

Hyper-Recombination, Diversity, and Antibiotic Resistance in Pneumococcus

(2009) W. P. Hanage et al.   SCIENCE

Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach

(2009) Jing Tang et al.   PLoS Computational Biology

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

(2008) Jukka Corander et al.   BMC BIOINFORMATICS

MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi

(2008) G. Margos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA