- Home
- Publications
- Publication Search
- Publication Details
Title
Phylodynamics on local sexual contact networks
Authors
Keywords
Phylogenetics, Phylogenetic analysis, Network analysis, Pathogens, HIV epidemiology, Epidemiological statistics, Infectious disease modeling, Simulation and modeling
Journal
PLoS Computational Biology
Volume 13, Issue 3, Pages e1005448
Publisher
Public Library of Science (PLoS)
Online
2017-03-29
DOI
10.1371/journal.pcbi.1005448
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- HIV-1 Transmission During Recent Infection and During Treatment Interruptions as Major Drivers of New Infections in the Swiss HIV Cohort Study
- (2015) Alex Marzel et al. CLINICAL INFECTIOUS DISEASES
- Chains of transmission and control of Ebola virus disease in Conakry, Guinea, in 2014: an observational study
- (2015) Ousmane Faye et al. LANCET INFECTIOUS DISEASES
- Complex dynamics of synergistic coinfections on realistically clustered networks
- (2015) Laurent Hébert-Dufresne et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution and emergence of infectious diseases in theoretical and real-world networks
- (2015) Gabriel E. Leventhal et al. Nature Communications
- Six challenges in measuring contact networks for use in modelling
- (2015) K. Eames et al. Epidemics
- Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set
- (2015) Matthew Hall et al. PLoS Computational Biology
- HIV Competition Dynamics over Sexual Networks: First Comer Advantage Conserves Founder Effects
- (2015) Bence Ferdinandy et al. PLoS Computational Biology
- Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data
- (2014) Xavier Didelot et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylodynamic Inference for Structured Epidemiological Models
- (2014) David A. Rasmussen et al. PLoS Computational Biology
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- Dynamics of stochastic epidemics on heterogeneous networks
- (2013) Matthew Graham et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Modelling tree shape and structure in viral phylodynamics
- (2013) S. D. W. Frost et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies
- (2013) Katy Robinson et al. PLoS Computational Biology
- Inferring Epidemic Contact Structure from Phylogenetic Trees
- (2012) Gabriel E. Leventhal et al. PLoS Computational Biology
- Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection
- (2012) Erik M. Volz et al. PLoS Computational Biology
- Complex Population Dynamics and the Coalescent Under Neutrality
- (2011) Erik M. Volz GENETICS
- Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic
- (2011) Andrew J. Leigh Brown et al. JOURNAL OF INFECTIOUS DISEASES
- From Markovian to pairwise epidemic models and the performance of moment closure approximations
- (2011) Michael Taylor et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Rates of coalescence for common epidemiological models at equilibrium
- (2011) K. Koelle et al. Journal of the Royal Society Interface
- Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data
- (2011) R. J. F. Ypma et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Effects of Heterogeneous and Clustered Contact Patterns on Infectious Disease Dynamics
- (2011) Erik M. Volz et al. PLoS Computational Biology
- Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts
- (2011) Luis E. C. Rocha et al. PLoS Computational Biology
- Reconstructing disease outbreaks from genetic data: a graph approach
- (2010) T Jombart et al. HEREDITY
- Longitudinal Phylogenetic Surveillance Identifies Distinct Patterns of Cluster Dynamics
- (2010) Manon Ragonnet-Cronin et al. JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES
- Molecular Epidemiology Reveals Long‐Term Changes in HIV Type 1 Subtype B Transmission in Switzerland
- (2010) Roger D. Kouyos et al. JOURNAL OF INFECTIOUS DISEASES
- Insights from unifying modern approximations to infections on networks
- (2010) T. House et al. Journal of the Royal Society Interface
- Viral phylodynamics and the search for an 'effective number of infections'
- (2010) S. D. W. Frost et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylodynamics of Infectious Disease Epidemics
- (2009) Erik M. Volz et al. GENETICS
- On incomplete sampling under birth–death models and connections to the sampling-based coalescent
- (2009) Tanja Stadler JOURNAL OF THEORETICAL BIOLOGY
- Percolation and epidemics in random clustered networks
- (2009) Joel C. Miller PHYSICAL REVIEW E
- Random Graphs with Clustering
- (2009) M. E. J. Newman PHYSICAL REVIEW LETTERS
- The impact of network clustering and assortativity on epidemic behaviour
- (2009) Jennifer Badham et al. THEORETICAL POPULATION BIOLOGY
- Integrating stochasticity and network structure into an epidemic model
- (2008) C. E. Dangerfield et al. Journal of the Royal Society Interface
- Dynamic social networks and the implications for the spread of infectious disease
- (2008) J. M Read et al. Journal of the Royal Society Interface
- Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus
- (2008) E. M Cottam et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started