Synthesizing developmental trajectories

From morphogen to morphogenesis and back

(2017) Darren Gilmour et al.   NATURE

Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development

(2017) Abbas H Rizvi et al.   NATURE BIOTECHNOLOGY

Divergent effects of intrinsically active MEK variants on developmental Ras signaling

(2017) Yogesh Goyal et al.   NATURE GENETICS

Enhancer Control of Transcriptional Bursting

(2016) Takashi Fukaya et al.   CELL

A multi-modal parcellation of human cerebral cortex

(2016) Matthew F. Glasser et al.   NATURE

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

(2016) Loïc A Royer et al.   NATURE BIOTECHNOLOGY

Imagining the future of bioimage analysis

(2016) Erik Meijering et al.   NATURE BIOTECHNOLOGY

Diffusion pseudotime robustly reconstructs lineage branching

(2016) Laleh Haghverdi et al.   NATURE METHODS

Discovering governing equations from data by sparse identification of nonlinear dynamical systems

(2016) Steven L. Brunton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An interactive three-dimensional digital atlas and quantitative database of human development

(2016) Bernadette S. de Bakker et al.   SCIENCE

Dynamics of Inductive ERK Signaling in the Drosophila Embryo

(2015) Bomyi Lim et al.   CURRENT BIOLOGY

Temporal ordering and registration of images in studies of developmental dynamics

(2015) C. J. Dsilva et al.   DEVELOPMENT

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Tissue cartography: compressing bio-image data by dimensional reduction

(2015) Idse Heemskerk et al.   NATURE METHODS

Pervasive robustness in biological systems

(2015) Marie-Anne Félix et al.   NATURE REVIEWS GENETICS

Deep Scattering Spectrum

(2014) Joakim Anden et al.   IEEE TRANSACTIONS ON SIGNAL PROCESSING

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Spatially resolved transcriptomics and beyond

(2014) Nicola Crosetto et al.   NATURE REVIEWS GENETICS

A High-Resolution Spatiotemporal Atlas of Gene Expression of the Developing Mouse Brain

(2014) Carol L. Thompson et al.   NEURON

Mathematical model of adult stem cell regeneration with cross-talk between genetic and epigenetic regulation

(2014) J. Lei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordination of progenitor specification and growth in mouse and chick spinal cord

(2014) A. Kicheva et al.   SCIENCE

A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis

(2014) Carlos Castro-González et al.   PLoS Computational Biology

Microfluidic trap array for massively parallel imaging of Drosophila embryos

(2013) Thomas J Levario et al.   Nature Protocols

Spatial expression of transcription factors in Drosophila embryonic organ development

(2013) Ann S Hammonds et al.   GENOME BIOLOGY

Group Invariant Scattering

(2012) Stéphane Mallat   COMMUNICATIONS ON PURE AND APPLIED MATHEMATICS

Modeling transcriptional networks in Drosophila development at multiple scales

(2011) Zeba Wunderlich et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

(2008) Charless C. Fowlkes et al.   CELL

Pulsed contractions of an actin–myosin network drive apical constriction

(2008) Adam C. Martin et al.   NATURE