Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand
Authors
Keywords
<em class=EmphasisTypeItalic >Escherichia coli</em>, ESBL, Genome, Sequence, Phylogeny
Journal
Genome Medicine
Volume 9, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-09-06
DOI
10.1186/s13073-017-0471-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- High Prevalence of Non-ST131 CTX-M-15-Producing Escherichia coli in Healthy Cattle in Lebanon
- (2017) Mohamad Diab et al. Microbial Drug Resistance
- Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae
- (2017) Chakkaphan Runcharoen et al. Genome Medicine
- Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom
- (2017) Hayley J. Brodrick et al. Genome Medicine
- Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production
- (2017) Yang Wang et al. Nature Microbiology
- The first report of NDM-5–producing uropathogenic Escherichia coli isolates in South Korea
- (2016) Min Park et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Identification of a novel plasmid-mediated colistin-resistance gene,mcr-2, inEscherichia coli, Belgium, June 2016
- (2016) Basil Britto Xavier et al. Eurosurveillance
- Transferable resistance to colistin: a new but old threat: Table 1.
- (2016) Stefan Schwarz et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
- (2016) Yi-Yun Liu et al. LANCET INFECTIOUS DISEASES
- Occurrence and molecular characteristics of antimicrobial resistance ofEscherichia colifrom broilers, pigs and meat products in Thailand and Cambodia provinces
- (2016) Suthathip Trongjit et al. MICROBIOLOGY AND IMMUNOLOGY
- Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
- (2016) Nicole Stoesser et al. mBio
- First identification of NDM-5 associated with OXA-181 in Escherichia coli from Egypt
- (2016) Doaa Gamal et al. Emerging Microbes & Infections
- Genome-based characterization of hospital-adapted Enterococcus faecalis lineages
- (2016) Kathy E. Raven et al. Nature Microbiology
- Extended-Spectrum-β-Lactamase-Producing Enterobacteriaceae Isolated from Vegetables Imported from the Dominican Republic, India, Thailand, and Vietnam
- (2015) Katrin Zurfluh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Detection of Klebsiella pneumoniae co-producing NDM-7 and OXA-181, Escherichia coli producing NDM-5 and Acinetobacter baumannii producing OXA-23 in a single patient
- (2015) Anette M. Hammerum et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses
- (2015) N. Stoesser et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Distribution, Numbers, and Diversity of ESBL-Producing E. coli in the Poultry Farm Environment
- (2015) Hetty Blaak et al. PLoS One
- NDM-5 Carbapenemase-Encoding Gene in Multidrug-Resistant Clinical Isolates of Escherichia coli from Algeria
- (2014) Asma Sassi et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- First Report of Metallo-β-Lactamase NDM-5-Producing Escherichia coli in Japan
- (2014) Ryuichi Nakano et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Genotypic and Phenotypic Profiles of Escherichia coli Isolates Belonging to Clinical Sequence Type 131 (ST131), Clinical Non-ST131, and Fecal Non-ST131 Lineages from India
- (2014) Arif Hussain et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- blaNDM-5Carried by an IncX3 Plasmid in Escherichia coli Sequence Type 167
- (2014) Ping Yang et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- New Delhi Metallo-β-Lactamase–Producing Carbapenem-ResistantEscherichia coliAssociated With Exposure to Duodenoscopes
- (2014) Lauren Epstein et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Characterization of an IncN2-type blaNDM-1-carrying plasmid in Escherichia coli ST131 and Klebsiella pneumoniae ST11 and ST15 isolates in Thailand
- (2014) Thidarat Netikul et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution
- (2014) Astrid von Mentzer et al. NATURE GENETICS
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
- (2014) Nicholas J. Croucher et al. NUCLEIC ACIDS RESEARCH
- Global dissemination of a multidrug resistant Escherichia coli clone
- (2014) N. K. Petty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-genome sequencing to control antimicrobial resistance
- (2014) Claudio U. Köser et al. TRENDS IN GENETICS
- Prevalence of antibiotic resistant bacteria in healthy adults, foods, food animals, and the environment in selected areas in Thailand
- (2014) Adhiratha Boonyasiri et al. Pathogens and Global Health
- Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages
- (2014) Mark de Been et al. PLoS Genetics
- Molecular Characterization of CTX-M β-Lactamase and Associated Addiction Systems in Escherichia coli Circulating among Cattle, Farm Workers, and the Farm Environment
- (2013) Migma Dorji Tamang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Escherichia coli Sequence Type 131 (ST131) Subclone H30 as an Emergent Multidrug-Resistant Pathogen Among US Veterans
- (2013) Aylin Colpan et al. CLINICAL INFECTIOUS DISEASES
- Extended-spectrum cephalosporin-resistant gram-negative organisms in livestock: An emerging problem for human health?
- (2013) Salome N. Seiffert et al. DRUG RESISTANCE UPDATES
- Prevalence and Characteristics of the Epidemic Multiresistant Escherichia coli ST131 Clonal Group among Extended-Spectrum Beta-Lactamase-Producing E. coli Isolates in Copenhagen, Denmark
- (2013) B. Olesen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Molecular Epidemiological Analysis of Escherichia coli Sequence Type ST131 (O25:H4) andblaCTX-M-15among Extended-Spectrum-β-Lactamase-Producing E. coli from the United States, 2000 to 2009
- (2012) James R. Johnson et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Characterization of Extended-Spectrum β-Lactamase Genes Found among Escherichia coli Isolates from Duck and Environmental Samples Obtained on a Duck Farm
- (2012) Junying Ma et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- High-Resolution Two-Locus Clonal Typing of Extraintestinal Pathogenic Escherichia coli
- (2012) Scott J. Weissman et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Virulence of Escherichia coli Clinical Isolates in a Murine Sepsis Model in Relation to Sequence Type ST131 Status, Fluoroquinolone Resistance, and Virulence Genotype
- (2012) James R. Johnson et al. INFECTION AND IMMUNITY
- Emergence of NDM-1- and IMP-14a-producing Enterobacteriaceae in Thailand
- (2012) B. Rimrang et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Role of Homologous Recombination in Adaptive Diversification of Extraintestinal Escherichia coli
- (2012) Sandip Paul et al. JOURNAL OF BACTERIOLOGY
- Genomic Diversity of Escherichia Isolates from Diverse Habitats
- (2012) Seungdae Oh et al. PLoS One
- Occurrence of CTX-M Producing Escherichia coli in Soils, Cattle, and Farm Environment in France (Burgundy Region)
- (2012) Alain Hartmann et al. Frontiers in Microbiology
- A Novel Variant, NDM-5, of the New Delhi Metallo-β-Lactamase in a Multidrug-Resistant Escherichia coli ST648 Isolate Recovered from a Patient in the United Kingdom
- (2011) Michael Hornsey et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance
- (2011) A.-P. Magiorakos et al. CLINICAL MICROBIOLOGY AND INFECTION
- Detection of clinically important -lactamases in commensal Escherichia coli of human and swine origin in western China
- (2011) G.-B. Tian et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
- (2011) C. Luo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain
- (2010) B. A. Rogers et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Molecular Characteristics of Travel-Related Extended-Spectrum- -Lactamase-Producing Escherichia coli Isolates from the Calgary Health Region
- (2009) J. D. D. Pitout et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Prevalence of Antibiotic Resistance in Drinking Water Treatment and Distribution Systems
- (2009) C. Xi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Extended-spectrum β-lactamase-producing Enterobacteriaceae: an emerging public-health concern
- (2008) Johann DD Pitout et al. LANCET INFECTIOUS DISEASES
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started