Genome-based characterization of hospital-adapted Enterococcus faecalis lineages

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system

(2015) Li-Yang Hsu et al.   GENOME BIOLOGY

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Nonclinical and Clinical Enterococcus faecium Strains, but Not Enterococcus faecalis Strains, Have Distinct Structural and Functional Genomic Features

(2013) Eun Bae Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antimicrobial-Resistant Pathogens Associated with Healthcare-Associated Infections Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009–2010

(2012) Dawn M. Sievert et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

(2012) Timothy M Walker et al.   LANCET INFECTIOUS DISEASES

Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

(2012) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

Hospital Networks and the Dispersal of Hospital-Acquired Pathogens by Patient Transfer

(2012) Tjibbe Donker et al.   PLoS One

A review of the life history, invasion process, and potential management of Clavelina lepadiformis Müller, 1776: a recent invasion of the northwest Atlantic

(2012) James Reinhardt et al.   Management of Biological Invasions

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Insight into antimicrobial susceptibility and population structure of contemporary human Enterococcus faecalis isolates from Europe

(2011) A. Kuch et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Detection of recombination events in bacterial genomes from large population samples

(2011) Pekka Marttinen et al.   NUCLEIC ACIDS RESEARCH

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Involvement, and dissemination, of the enterococcal small multidrug resistance transporter QacZ in resistance to quaternary ammonium compounds

(2010) Teresa M. Braga et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The Extracytoplasmic Function Sigma Factor SigV Plays a Key Role in the Original Model of Lysozyme Resistance and Virulence of Enterococcus faecalis

(2010) André Le Jeune et al.   PLoS One

Inducible expression eliminates the fitness cost of vancomycin resistance in enterococci

(2010) M.-L. Foucault et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

Further Characterization of the epa Gene Cluster and Epa Polysaccharides of Enterococcus faecalis

(2009) F. Teng et al.   INFECTION AND IMMUNITY

Trimethoprim resistance genes in vancomycin-resistant Enterococcus faecium clinical isolates from France

(2009) Vincent Cattoir et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Clonal expansion within clonal complex 2 and spread of vancomycin-resistant plasmids among different genetic lineages of Enterococcus faecalis from Portugal

(2009) A. R. Freitas et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Glycolipids are involved in biofilm accumulation and prolonged bacteraemia inEnterococcus faecalis

(2009) Christian Theilacker et al.   MOLECULAR MICROBIOLOGY

An AraC-Type Transcriptional Regulator Encoded on the Enterococcus faecalis Pathogenicity Island Contributes to Pathogenesis and Intracellular Macrophage Survival

(2008) P. S. Coburn et al.   INFECTION AND IMMUNITY