Adipose tissue DNA methylome changes in development of new-onset diabetes after kidney transplantation

Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data

(2016) Yun Zhang et al.   BRIEFINGS IN BIOINFORMATICS

Calcineurin Inhibitors: Pharmacologic Mechanisms Impacting Both Insulin Resistance and Insulin Secretion Leading to Glucose Dysregulation and Diabetes Mellitus

(2016) HA Chakkera et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis

(2015) Zhifu Sun et al.   Epigenomics

Notch intracellular domain overexpression in adipocytes confers lipodystrophy in mice

(2015) Dionysios V. Chartoumpekis et al.   Molecular Metabolism

Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments

(2014) Egor Dolzhenko et al.   BMC BIOINFORMATICS

Altered DNA Methylation and Differential Expression of Genes Influencing Metabolism and Inflammation in Adipose Tissue From Subjects With Type 2 Diabetes

(2014) E. Nilsson et al.   DIABETES

CXCL12 secreted from adipose tissue recruits macrophages and induces insulin resistance in mice

(2014) Dayea Kim et al.   DIABETOLOGIA

Inhibition of Notch signaling promotes browning of white adipose tissue and ameliorates obesity

(2014) Pengpeng Bi et al.   NATURE MEDICINE

GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes

(2014) John D. Eicher et al.   NUCLEIC ACIDS RESEARCH

The Expression of Relaxin-3 in Adipose Tissue and its Effects on Adipogenesis

(2014) Hiroyuki Yamamoto et al.   PROTEIN AND PEPTIDE LETTERS

Genetics of New-Onset Diabetes after Transplantation

(2013) J. A. McCaughan et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

(2012) Zhifu Sun et al.   BIOINFORMATICS

The Genetic and Epigenetic Basis of Type 2 Diabetes and Obesity

(2012) A W Drong et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Epigenetics: The missing link to understanding β-cell dysfunction in the pathogenesis of type 2 diabetes

(2012) Elizabeth R. Gilbert et al.   Epigenetics

Notch signaling in diabetic nephropathy

(2012) Ramon Bonegio et al.   EXPERIMENTAL CELL RESEARCH

Annotation of functional variation in personal genomes using RegulomeDB

(2012) A. P. Boyle et al.   GENOME RESEARCH

Notch–RBP-J signaling regulates the transcription factor IRF8 to promote inflammatory macrophage polarization

(2012) Haixia Xu et al.   NATURE IMMUNOLOGY

Cardiovascular Consequences of New-Onset Hyperglycemia After Kidney Transplantation

(2012) Rianne P. Wauters et al.   TRANSPLANTATION

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data

(2012) Yaping Liu et al.   GENOME BIOLOGY

Stromal cell-derived factor-1 (SDF-1)/chemokine (C-X-C motif) receptor 4 (CXCR4) axis activation induces intra-islet glucagon-like peptide-1 (GLP-1) production and enhances beta cell survival

(2011) Z. Liu et al.   DIABETOLOGIA

Complications associated with new-onset diabetes after kidney transplantation

(2011) Adnan Sharif et al.   Nature Reviews Nephrology

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

(2011) L. D. Ward et al.   NUCLEIC ACIDS RESEARCH

Relationship between Inpatient Hyperglycemia and Insulin Treatment after Kidney Transplantation and Future New Onset Diabetes Mellitus

(2010) H. A. Chakkera et al.   Clinical Journal of the American Society of Nephrology

Calcineurin Signaling Regulates Human Islet β-Cell Survival

(2010) Scott A. Soleimanpour et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The metabolic syndrome following kidney transplantation

(2010) David Goldsmith et al.   KIDNEY INTERNATIONAL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS

Urea-induced ROS generation causes insulin resistance in mice with chronic renal failure

(2009) Maria D’Apolito et al.   JOURNAL OF CLINICAL INVESTIGATION

Inhibitory effect of IL-8 on insulin action in human adipocytes via MAP kinase pathway

(2009) Chikaaki Kobashi et al.   Journal of Inflammation-London

Review article: The role of adipose tissue in uraemia-related insulin resistance

(2008) BOGDAN MANOLESCU et al.   NEPHROLOGY

Insulin resistance induced by tumor necrosis factor-α in myocytes and brown adipocytes12

(2007) M. Lorenzo et al.   JOURNAL OF ANIMAL SCIENCE