The quest for epigenetic regulation underlying unisexual flower development in Cucumis melo

Put your 3D glasses on: plant chromatin is on show

(2016) Natalia Y. Rodriguez-Granados et al.   JOURNAL OF EXPERIMENTAL BOTANY

Epigenetic Modifications and Plant Hormone Action

(2016) Chizuko Yamamuro et al.   Molecular Plant

Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon

(2016) Takashi Akagi et al.   PLANT CELL

EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling

(2016) Fan Zhang et al.   Nature Communications

Editorial: Recent Advances of Epigenetics in Crop Biotechnology

(2016) Raúl Álvarez-Venegas et al.   Frontiers in Plant Science

Genome-wide histone acetylation correlates with active transcription in maize

(2015) Wei Zhang et al.   GENOMICS

Genome-wide comparative analysis of digital gene expression tag profiles during maize ear development

(2015) Hongjun Liu et al.   GENOMICS

Co-ordination of Flower Development Through Epigenetic Regulation in Two Model Species: Rice and Arabidopsis

(2015) S. Guo et al.   PLANT AND CELL PHYSIOLOGY

Chromatin state analysis of the barley epigenome reveals a higher-order structure defined by H3K27me1 and H3K27me3 abundance

(2015) Katie Baker et al.   PLANT JOURNAL

A cucurbit androecy gene reveals how unisexual flowers develop and dioecy emerges

(2015) A. Boualem et al.   SCIENCE

Genome-Wide Profiling of Histone Modifications (H3K9me2 and H4K12ac) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.)

(2015) Vasudevan Ayyappan et al.   PLoS One

The relative and absolute frequencies of angiosperm sexual systems: Dioecy, monoecy, gynodioecy, and an updated online database

(2014) Susanne S. Renner   AMERICAN JOURNAL OF BOTANY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

(2014) Li Shen et al.   BMC GENOMICS

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Involvement of ethylene in sex expression and female flower development in watermelon (Citrullus lanatus)

(2014) Susana Manzano et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A Cucumber DELLA Homolog CsGAIP May Inhibit Staminate Development through Transcriptional Repression of B Class Floral Homeotic Genes

(2014) Yan Zhang et al.   PLoS One

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Comparative transcriptomic analysis of male and female flowers of monoecious Quercus suber

(2014) Margarida Rocheta et al.   Frontiers in Plant Science

Epigenetics of sex determination and gonadogenesis

(2013) Francesc Piferrer   DEVELOPMENTAL DYNAMICS

Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica

(2013) Zhou Du et al.   Molecular Plant

diffReps: Detecting Differential Chromatin Modification Sites from ChIP-seq Data with Biological Replicates

(2013) Li Shen et al.   PLoS One

A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization

(2012) Pedro Crevillén et al.   EMBO JOURNAL

Ordered changes in histone modifications at the core of the Arabidopsis circadian clock

(2012) J. Malapeira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome of melon (Cucumis melo L.)

(2012) J. Garcia-Mas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

(2012) C. Smaczniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flowering time control: another window to the connection between antisense RNA and chromatin

(2012) Robert Ietswaart et al.   TRENDS IN GENETICS

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Epigenetic control of gene regulation in plants

(2011) Massimiliano Lauria et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

Gibberellin control of stamen development: a fertile field

(2011) Andrew R.G. Plackett et al.   TRENDS IN PLANT SCIENCE

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Charting histone modifications and the functional organization of mammalian genomes

(2010) Vicky W. Zhou et al.   NATURE REVIEWS GENETICS

Natural and engineered nicking endonucleases--from cleavage mechanism to engineering of strand-specificity

(2010) S.-H. Chan et al.   NUCLEIC ACIDS RESEARCH

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

(2010) Junli Zhou et al.   PLANT MOLECULAR BIOLOGY

Digital Gene Expression Signatures for Maize Development

(2010) A. L. Eveland et al.   PLANT PHYSIOLOGY

Engineering Melon Plants with Improved Fruit Shelf Life Using the TILLING Approach

(2010) Fatima Dahmani-Mardas et al.   PLoS One

Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia

(2010) P. Sebastian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

(2009) Chongzhi Zang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome

(2009) J. T. Lee   GENES & DEVELOPMENT

A transposon-induced epigenetic change leads to sex determination in melon

(2009) Antoine Martin et al.   NATURE

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Ethylene perception is involved in female cucumber flower development

(2009) Dong-Hui Wang et al.   PLANT JOURNAL

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

A Conserved Ethylene Biosynthesis Enzyme Leads to Andromonoecy in Two Cucumis Species

(2009) Adnane Boualem et al.   PLoS One

tasselseed1 Is a Lipoxygenase Affecting Jasmonic Acid Signaling in Sex Determination of Maize

(2009) I. F. Acosta et al.   SCIENCE

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice

(2008) Dong Wang et al.   BMC GENOMICS

High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression

(2008) X. Li et al.   PLANT CELL

A PHD-Polycomb Repressive Complex 2 triggers the epigenetic silencing of FLC during vernalization

(2008) F. De Lucia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory RNAs and chromatin modification in dosage compensation: A continuous path from flies to humans?

(2008) Roxani Angelopoulou et al.   Reproductive Biology and Endocrinology

A Conserved Mutation in an Ethylene Biosynthesis Enzyme Leads to Andromonoecy in Melons

(2008) A. Boualem et al.   SCIENCE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY