Genome-Wide Profiling of Histone Modifications (H3K9me2 and H4K12ac) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.)

The interactive effects of simultaneous biotic and abiotic stresses on plants: Mechanistic understanding from drought and pathogen combination

(2015) Venkategowda Ramegowda et al.   JOURNAL OF PLANT PHYSIOLOGY

Protein Kinases in Plant-Pathogenic Fungi: Conserved Regulators of Infection

(2014) David Turrà et al.   Annual Review of Phytopathology

RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions

(2014) Yuhya Wakasa et al.   BMC PLANT BIOLOGY

Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)

(2014) Ralf Stracke et al.   BMC PLANT BIOLOGY

Mining whole genomes and transcriptomes of Jatropha (Jatropha curcas) and Castor bean (Ricinus communis) for NBS-LRR genes and defense response associated transcription factors

(2014) Archit Sood et al.   MOLECULAR BIOLOGY REPORTS

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress

(2014) Sezer Okay et al.   MOLECULAR GENETICS AND GENOMICS

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

Environmental History Modulates Arabidopsis Pattern-Triggered Immunity in a HISTONE ACETYLTRANSFERASE1-Dependent Manner

(2014) P. Singh et al.   PLANT CELL

RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis

(2014) Alejandra Muñoz-Bodnar et al.   PLANT CELL REPORTS

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq

(2013) Md Shamimuzzaman et al.   BMC GENOMICS

Plant bZIP Transcription Factors Responsive to Pathogens: A Review

(2013) Murilo Alves et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Recent Advances in Dissecting Stress-Regulatory Crosstalk in Rice

(2013) Rita Sharma et al.   Molecular Plant

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Uromyces appendiculatusin Honduras: Pathogen Diversity and Host Resistance Screening

(2013) Maricelis Acevedo et al.   PLANT DISEASE

Biological Control of Apple Ring Rot on Fruit by Bacillus amyloliquefaciens 9001

(2013) Yan Li et al.   Plant Pathology Journal

Global Profiling in Vestibular Schwannomas Shows Critical Deregulation of MicroRNAs and Upregulation in Those Included in Chromosomal Region 14q32

(2013) Miguel Torres-Martin et al.   PLoS One

Epigenetic responses to drought stress in rice (Oryza sativa L.)

(2013) Gayacharan et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Use of Wild Relatives and Closely Related Species to Adapt Common Bean to Climate Change

(2013) Timothy Porch et al.   Agronomy-Basel

Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

(2012) Andrés J Cortés et al.   BMC GENETICS

Rapid transcriptome characterization and parsing of sequences in a non-model host-pathogen interaction; pea-Sclerotinia sclerotiorum

(2012) Xiaofeng Zhuang et al.   BMC GENOMICS

Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean

(2012) Yang Kang et al.   BMC PLANT BIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Epigenetic responses to stress: triple defense?

(2012) Ruben Gutzat et al.   CURRENT OPINION IN PLANT BIOLOGY

Expression profiling of ABA pathway transcripts indicates crosstalk between abiotic and biotic stress responses in Arabidopsis

(2012) Zhulong Chan   GENOMICS

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Stress-Induced Chromatin Changes: A Critical View on Their Heritability

(2012) A. Pecinka et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids

(2012) H. Shen et al.   PLANT CELL

CML9, an Arabidopsis calmodulin-like protein, contributes to plant innate immunity through a flagellin-dependent signalling pathway

(2012) Louis-Jérôme Leba et al.   PLANT JOURNAL

Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production

(2012) Chongyuan Luo et al.   PLANT JOURNAL

An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants

(2012) J. A. O'Rourke et al.   PLANT PHYSIOLOGY

Involvement of microRNA-Mediated Gene Expression Regulation in the Pathological Development of Stem Canker Disease in Populus trichocarpa

(2012) Jia-Ping Zhao et al.   PLoS One

Diversification and Population Structure in Common Beans (Phaseolus vulgaris L.)

(2012) Matthew W. Blair et al.   PLoS One

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome

(2012) Y. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing

(2011) Venu Kalavacharla et al.   BMC PLANT BIOLOGY

Genome instability and epigenetic modification—heritable responses to environmental stress?

(2011) Alex Boyko et al.   CURRENT OPINION IN PLANT BIOLOGY

Microarray profiling reveals microRNAs involving soybean resistance to Phytophthora sojae

(2011) Na Guo et al.   GENOME

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks

(2011) Celina Costas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Rapid and Reversible Light-Mediated Chromatin Modifications of ArabidopsisPhytochrome ALocus

(2011) In-Cheol Jang et al.   PLANT CELL

ABA signal transduction at the crossroad of biotic and abiotic stress responses

(2011) SUNG CHUL LEE et al.   PLANT CELL AND ENVIRONMENT

Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development

(2011) Nicole Gaude et al.   PLANT JOURNAL

Genetic Rearrangements Can Modify Chromatin Features at Epialleles

(2011) Andrea M. Foerster et al.   PLoS Genetics

Comparing signaling mechanisms engaged in pattern-triggered and effector-triggered immunity

(2010) Kenichi Tsuda et al.   CURRENT OPINION IN PLANT BIOLOGY

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Differential innate immune signalling via Ca2+ sensor protein kinases

(2010) Marie Boudsocq et al.   NATURE

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Crosstalk between biotic and abiotic stress responses in tomato is mediated by theAIM1transcription factor

(2009) Synan AbuQamar et al.   PLANT JOURNAL

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more

(2009) François Roudier et al.   TRENDS IN GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Virulence Diversity of the Common Bean Rust Pathogen Within and Among Individual Bean Fields and Development of Sampling Strategies

(2008) C. Jochua et al.   PLANT DISEASE

Cross Talk in Defense Signaling

(2008) A. Koornneef et al.   PLANT PHYSIOLOGY