Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae)

Phylogenetic signal and potential for invasiveness

(2016) Kapil R. Raje et al.   AGRICULTURAL AND FOREST ENTOMOLOGY

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life

(2016) Chris A. Hamilton et al.   BMC EVOLUTIONARY BIOLOGY

Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)

(2016) Andrew Donovan Young et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny and evolution of the superfamily Chrysomeloidea (Coleoptera: Cucujiformia)

(2016) STEPHANIE HADDAD et al.   SYSTEMATIC ENTOMOLOGY

Phylogenomic analyses of bat subordinal relationships based on transcriptome data

(2016) Ming Lei et al.   Scientific Reports

Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards

(2015) Matthew C Brandley et al.   BMC EVOLUTIONARY BIOLOGY

Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment

(2015) Ron I. Eytan et al.   BMC EVOLUTIONARY BIOLOGY

A new longhorn beetle (Coleoptera: Cerambycidae) from the Early Cretaceous Jehol Biota of Western Liaoning in China

(2015) Yali Yu et al.   CRETACEOUS RESEARCH

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution"

(2015) K. M. Kjer et al.   SCIENCE

Phylogeny and classification of Cucujoidea and the recognition of a new superfamily Coccinelloidea (Coleoptera: Cucujiformia)

(2015) JAMES A. ROBERTSON et al.   SYSTEMATIC ENTOMOLOGY

The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution

(2015) DUANE D. MCKENNA et al.   SYSTEMATIC ENTOMOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

(2014) Evgenia V. Kriventseva et al.   NUCLEIC ACIDS RESEARCH

Phylogenomics provides strong evidence for relationships of butterflies and moths

(2014) A. Y. Kawahara et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries

(2013) Meredith L. Carpenter et al.   AMERICAN JOURNAL OF HUMAN GENETICS

High-Throughput Genomic Data in Systematics and Phylogenetics

(2013) Emily Moriarty Lemmon et al.   Annual Review of Ecology Evolution and Systematics

The earliest known longhorn beetle (Cerambycidae: Prioninae) and implications for the early evolution of Chrysomeloidea

(2013) Bo Wang et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unlocking the vault: next-generation museum population genomics

(2013) Ke Bi et al.   MOLECULAR ECOLOGY

Searching for the optimal data partitioning strategy in mitochondrial phylogenomics: A phylogeny of Acridoidea (Insecta: Orthoptera: Caelifera) as a case study

(2013) James R. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales

(2013) Brian Tilston Smith et al.   SYSTEMATIC BIOLOGY

Building the Coleoptera tree-of-life for >8000 species: composition of public DNA data and fit with Linnaean classification

(2013) LADISLAV BOCAK et al.   SYSTEMATIC ENTOMOLOGY

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

(2012) Ke Bi et al.   BMC GENOMICS

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2012) Darin R Rokyta et al.   BMC GENOMICS

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

(2012) Oliver Niehuis et al.   CURRENT BIOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

(2012) Robert M. Waterhouse et al.   NUCLEIC ACIDS RESEARCH

Resolving Discrepancy between Nucleotides and Amino Acids in Deep-Level Arthropod Phylogenomics: Differentiating Serine Codons in 21-Amino-Acid Models

(2012) Andreas Zwick et al.   PLoS One

Serine Codon-Usage Bias in Deep Phylogenomics: Pancrustacean Relationships as a Case Study

(2012) Omar Rota-Stabelli et al.   SYSTEMATIC BIOLOGY

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Molecular evidence of cycad seed predation by immature Aulacoscelidinae (Coleoptera: Orsodacnidae)

(2012) ALBERTO PRADO et al.   SYSTEMATIC ENTOMOLOGY

Exploration of data partitioning in an eight-gene data set: phylogeny of metalmark moths (Lepidoptera, Choreutidae)

(2012) Jadranka Rota et al.   ZOOLOGICA SCRIPTA

Phylogeny of the Coleoptera Based on Morphological Characters of Adults and Larvae

(2011) John F. Lawrence et al.   ANNALES ZOOLOGICI

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

Towards a Temporal Framework for “Inordinate Fondness”: Reconstructing the Macroevolutionary History of Beetles (Coleoptera)

(2011) Duane D. McKenna   Entomologica Americana

Family-Group Names In Coleoptera (Insecta)

(2011) Patrice Bouchard et al.   ZooKeys

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

9-Genes Reinforce the Phylogeny of Holometabola and Yield Alternate Views on the Phylogenetic Placement of Strepsiptera

(2010) Duane D. McKenna et al.   PLoS One

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture

(2010) H. A. Burbano et al.   SCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources

(2009) Guy R. Cochrane et al.   NUCLEIC ACIDS RESEARCH

Temporal lags and overlap in the diversification of weevils and flowering plants

(2009) D. D. McKenna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular phylogeny and divergence times of Malagasy tenrecs: Influence of data partitioning and taxon sampling on dating analyses

(2008) Céline Poux et al.   BMC EVOLUTIONARY BIOLOGY

The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree

(2008) Jeffrey P. Townsend et al.   JOURNAL OF MOLECULAR EVOLUTION

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

Evaluating the robustness of phylogenetic methods to among-site variability in substitution processes

(2008) M. T Holder et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Structural alignment of 18S and 28S rDNA sequences provides insights into phylogeny of Phytophaga (Coleoptera: Curculionoidea and Chrysomeloidea)

(2008) Adriana E. Marvaldi et al.   ZOOLOGICA SCRIPTA

Multilocus ribosomal RNA phylogeny of the leaf beetles (Chrysomelidae)

(2007) Jesús Gómez-Zurita et al.   CLADISTICS