Evolution of flower color pattern through selection on regulatory small RNAs

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench

(2017) Matthew Beckers et al.   RNA

Genomic responses to the socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals

(2017) Irina Mohorianu et al.   RNA

Generation of shape complexity through tissue conflict resolution

(2017) Alexandra B Rebocho et al.   eLife

Lirex: A Package for Identification of Long Inverted Repeats in Genomes

(2017) Yong Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Selection of Valid Reference Genes for Reverse Transcription Quantitative PCR Analysis inHeliconius numata(Lepidoptera: Nymphalidae)

(2016) Florence Piron Prunier et al.   JOURNAL OF INSECT SCIENCE

Genes controlling mimetic colour pattern variation in butterflies

(2016) Nicola J Nadeau   Current Opinion in Insect Science

MYB-FL controls gain and loss of floral UV absorbance, a key trait affecting pollinator preference and reproductive isolation

(2015) Hester Sheehan et al.   NATURE GENETICS

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation

(2014) Congting Ye et al.   PLoS One

Evolution of mir-92a Underlies Natural Morphological Variation in Drosophila melanogaster

(2013) Saad Arif et al.   CURRENT BIOLOGY

The genetic control of flower–pollinator specificity

(2013) Yao-Wu Yuan et al.   CURRENT OPINION IN PLANT BIOLOGY

THE LOCI OF REPEATED EVOLUTION: A CATALOG OF GENETIC HOTSPOTS OF PHENOTYPIC VARIATION

(2013) Arnaud Martin et al.   EVOLUTION

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

CoLIde

(2013) Irina Mohorianu et al.   RNA Biology

Tools for mapping high-throughput sequencing data

(2012) Nuno A. Fonseca et al.   BIOINFORMATICS

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Identification of two genes causing reinforcement in the Texas wildflower Phlox drummondii

(2011) Robin Hopkins et al.   NATURE

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

MicroRNA Gene Evolution inArabidopsis lyrataandArabidopsis thaliana

(2010) Noah Fahlgren et al.   PLANT CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage

(2009) S. K. Nair et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of microRNAs and their targets: Are all microRNAs biologically relevant?

(2008) M AXTELL   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

(2008) Yoshikazu Tanaka et al.   PLANT JOURNAL