Genomic responses to the socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals

Exposure time to rivals and sensory cues affect how quickly males respond to changes in sperm competition threat

(2016) James Rouse et al.   ANIMAL BEHAVIOUR

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

(2016) Nicholas J. Schurch et al.   RNA

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

(2016) C. Alisha Quandt et al.   G3-Genes Genomes Genetics

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

(2015) Marek Gierliński et al.   BIOINFORMATICS

Molecular characterization, genomic structure and expressional profiles of a CXC chemokine receptor 4 (CXCR4) from rock bream Oplegnathus fasciatus

(2015) William Shanthakumar Thulasitha et al.   FISH & SHELLFISH IMMUNOLOGY

Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eelAnguilla anguilla

(2015) Allison M. Churcher et al.   MOLECULAR ECOLOGY

Sperm production responds to perceived sperm competition risk in male Drosophila melanogaster

(2014) Joshua P. Moatt et al.   PHYSIOLOGY & BEHAVIOR

Social Regulation of Human Gene Expression: Mechanisms and Implications for Public Health

(2013) Steven W. Cole   AMERICAN JOURNAL OF PUBLIC HEALTH

Social environmental effects on gene regulation

(2013) Jenny Tung et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

COSTS AND BENEFITS OF LIFETIME EXPOSURE TO MATING RIVALS IN MALEDROSOPHILA MELANOGASTER

(2013) Amanda Bretman et al.   EVOLUTION

FlyBase 102—advanced approaches to interrogating FlyBase

(2013) Susan E. St. Pierre et al.   NUCLEIC ACIDS RESEARCH

FlyPrimerBank: An Online Database for Drosophila melanogaster Gene Expression Analysis and Knockdown Evaluation of RNAi Reagents

(2013) Yanhui Hu et al.   G3-Genes Genomes Genetics

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

RNA-SeQC: RNA-seq metrics for quality control and process optimization

(2012) David S. DeLuca et al.   BIOINFORMATICS

Experience of mating rivals causes males to modulate sperm transfer in the fly Drosophila pseudoobscura

(2012) Tom A.R. Price et al.   JOURNAL OF INSECT PHYSIOLOGY

Drosophila melanogaster males increase the number of sperm in their ejaculate when perceiving rival males

(2012) Martyna Garbaczewska et al.   JOURNAL OF INSECT PHYSIOLOGY

Contribution of visual and circadian neural circuits to memory for prolonged mating induced by rivals

(2012) Woo Jae Kim et al.   NATURE NEUROSCIENCE

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Individual plastic responses by males to rivals reveal mismatches between behaviour and fitness outcomes

(2012) A. Bretman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Biological Indeterminacy

(2012) Ralph J. Greenspan   SCIENCE AND ENGINEERING ETHICS

Phenotypic Plasticity of the Drosophila Transcriptome

(2012) Shanshan Zhou et al.   PLoS Genetics

Males Use Multiple, Redundant Cues to Detect Mating Rivals

(2011) Amanda Bretman et al.   CURRENT BIOLOGY

Robust RT-qPCR Data Normalization: Validation and Selection of Internal Reference Genes during Post-Experimental Data Analysis

(2011) Daijun Ling et al.   PLoS One

Protein-specific manipulation of ejaculate composition in response to female mating status in Drosophila melanogaster

(2011) L. K. Sirot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

It's All Who You Know: The Evolution Of Socially Cued Anticipatory Plasticity As A Mating Strategy

(2011) Michael M. Kasumovic et al.   QUARTERLY REVIEW OF BIOLOGY

Quick-change artists: male plastic behavioural responses to rivals

(2011) Amanda Bretman et al.   TRENDS IN ECOLOGY & EVOLUTION

Exposure to rivals and plastic responses to sperm competition in Drosophila melanogaster

(2010) Amanda Bretman et al.   BEHAVIORAL ECOLOGY

PERCEIVED SPERM COMPETITION INTENSITY INFLUENCES SEMINAL FLUID PROTEIN PRODUCTION PRIOR TO COURTSHIP AND MATING

(2010) Kenneth M. Fedorka et al.   EVOLUTION

Frontiers in phenotypic plasticity research: new questions about mechanisms, induced responses and ecological impacts

(2010) Jacintha Ellers et al.   EVOLUTIONARY ECOLOGY

The Genetic Basis for Male x Female Interactions Underlying Variation in Reproductive Phenotypes of Drosophila

(2010) C. Y. Chow et al.   GENETICS

Socially-Responsive Gene Expression in Male Drosophila melanogaster Is Influenced by the Sex of the Interacting Partner

(2010) L. L. Ellis et al.   GENETICS

What can whole genome expression data tell us about the ecology and evolution of personality?

(2010) A. M. Bell et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Seminal Fluid Protein Allocation and Male Reproductive Success

(2009) Stuart Wigby et al.   CURRENT BIOLOGY

Comparison of social networks derived from ecological data: implications for inferring infectious disease dynamics

(2009) Sarah E. Perkins et al.   JOURNAL OF ANIMAL ECOLOGY

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

Plastic responses of male Drosophila melanogaster to the level of sperm competition increase male reproductive fitness

(2009) A. Bretman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

(2009)   PLoS Computational Biology

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE

Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating

(2008) Geoffrey D Findlay et al.   PLOS BIOLOGY