Enzyme-free nucleic acid dynamical systems

Constrained Multistate Sequence Design for Nucleic Acid Reaction Pathway Engineering

(2017) Brian R. Wolfe et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

An autonomous molecular assembler for programmable chemical synthesis

(2016) Wenjing Meng et al.   Nature Chemistry

The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology

(2016) Jonathan Garamella et al.   ACS Synthetic Biology

Rational design of functional and tunable oscillating enzymatic networks

(2015) Sergey N. Semenov et al.   Nature Chemistry

A plasmonic nanorod that walks on DNA origami

(2015) Chao Zhou et al.   Nature Communications

Rapid cell-free forward engineering of novel genetic ring oscillators

(2015) Henrike Niederholtmeyer et al.   eLife

Developmental Self-Assembly of a DNA Tetrahedron

(2014) John P. Sadowski et al.   ACS Nano

Dynamic DNA-toolbox reaction circuits: A walkthrough

(2014) Alexandre Baccouche et al.   METHODS

Sequence Design for a Test Tube of Interacting Nucleic Acid Strands

(2014) Brian R. Wolfe et al.   ACS Synthetic Biology

Two-domain DNA strand displacement

(2013) LUCA CARDELLI   MATHEMATICAL STRUCTURES IN COMPUTER SCIENCE

Hierarchical assembly of metal nanoparticles, quantum dots and organic dyes using DNA origami scaffolds

(2013) Robert Schreiber et al.   Nature Nanotechnology

Programmable chemical controllers made from DNA

(2013) Yuan-Jyue Chen et al.   Nature Nanotechnology

Transport and self-organization across different length scales powered by motor proteins and programmed by DNA

(2013) Adam J. M. Wollman et al.   Nature Nanotechnology

DNA hybridization kinetics: zippering, internal displacement and sequence dependence

(2013) Thomas E. Ouldridge et al.   NUCLEIC ACIDS RESEARCH

On the biophysics and kinetics of toehold-mediated DNA strand displacement

(2013) Niranjan Srinivas et al.   NUCLEIC ACIDS RESEARCH

Integrating DNA strand-displacement circuitry with DNA tile self-assembly

(2013) David Yu Zhang et al.   Nature Communications

A DNA tweezer-actuated enzyme nanoreactor

(2013) Minghui Liu et al.   Nature Communications

Predator–Prey Molecular Ecosystems

(2012) Teruo Fujii et al.   ACS Nano

Interenzyme Substrate Diffusion for an Enzyme Cascade Organized on Spatially Addressable DNA Nanostructures

(2012) Jinglin Fu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Extinction in neutrally stable stochastic Lotka-Volterra models

(2012) Alexander Dobrinevski et al.   PHYSICAL REVIEW E

Bottom-up construction of in vitro switchable memories

(2012) A. Padirac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Biomolecular implementation of linear I/O systems

(2011) K. Oishi et al.   IET Systems Biology

Remote Toehold: A Mechanism for Flexible Control of DNA Hybridization Kinetics

(2011) Anthony J. Genot et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Abstractions for DNA circuit design

(2011) M. R. Lakin et al.   Journal of the Royal Society Interface

Synthetic in vitro transcriptional oscillators

(2011) J. Kim et al.   Molecular Systems Biology

Programming an in vitro DNA oscillator using a molecular networking strategy

(2011) K. Montagne et al.   Molecular Systems Biology

Dynamic DNA nanotechnology using strand-displacement reactions

(2011) David Yu Zhang et al.   Nature Chemistry

Development of an artificial cell, from self-organization to computation and self-reproduction

(2011) Vincent Noireaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades

(2011) L. Qian et al.   SCIENCE

Applications of Aptamers as Sensors

(2010) Eun Jeong Cho et al.   Annual Review of Analytical Chemistry

Nucleic acid sequence design via efficient ensemble defect optimization

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Strand algebras for DNA computing

(2010) Luca Cardelli   Natural Computing

A proximity-based programmable DNA nanoscale assembly line

(2010) Hongzhou Gu et al.   NATURE

Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker

(2010) Yu He et al.   Nature Nanotechnology

Robustness and modularity properties of a non-covalent DNA catalytic reaction

(2010) D. Y. Zhang et al.   NUCLEIC ACIDS RESEARCH

DNA as a universal substrate for chemical kinetics

(2010) D. Soloveichik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Control of DNA Strand Displacement Kinetics Using Toehold Exchange

(2009) David Yu Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE

Programming biomolecular self-assembly pathways

(2008) Peng Yin et al.   NATURE