DNA hybridization kinetics: zippering, internal displacement and sequence dependence
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
DNA hybridization kinetics: zippering, internal displacement and sequence dependence
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 41, Issue 19, Pages 8886-8895
Publisher
Oxford University Press (OUP)
Online
2013-08-10
DOI
10.1093/nar/gkt687
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Optimizing DNA Nanotechnology through Coarse-Grained Modeling: A Two-Footed DNA Walker
- (2013) Thomas E. Ouldridge et al. ACS Nano
- Coarse-grained simulations of DNA overstretching
- (2013) Flavio Romano et al. JOURNAL OF CHEMICAL PHYSICS
- Exploring the mechanisms of DNA hybridization on a surface
- (2013) Terry J. Schmitt et al. JOURNAL OF CHEMICAL PHYSICS
- Slow closure of denaturation bubbles in DNA: Twist matters
- (2013) Anil Kumar Dasanna et al. PHYSICAL REVIEW E
- Mean-Field Interactions between Nucleic-Acid-Base Dipoles can Drive the Formation of a Double Helix
- (2013) Yi He et al. PHYSICAL REVIEW LETTERS
- LAMMPS framework for dynamic bonding and an application modeling DNA
- (2012) Carsten Svaneborg COMPUTER PHYSICS COMMUNICATIONS
- The effect of topology on the structure and free energy landscape of DNA kissing complexes
- (2012) Flavio Romano et al. JOURNAL OF CHEMICAL PHYSICS
- Sequence-dependent thermodynamics of a coarse-grained DNA model
- (2012) Petr Šulc et al. JOURNAL OF CHEMICAL PHYSICS
- DNA Cruciform Arms Nucleate through a Correlated but Asynchronous Cooperative Mechanism
- (2012) Christian Matek et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Self-assembly of short DNA duplexes: from a coarse-grained model to experiments through a theoretical link
- (2012) Cristiano De Michele et al. Soft Matter
- Lattice model of oligonucleotide hybridization in solution. I. Model and thermodynamics
- (2011) Juan C. Araque et al. JOURNAL OF CHEMICAL PHYSICS
- Thermodynamics of DNA hybridization on surfaces
- (2011) Terry J. Schmitt et al. JOURNAL OF CHEMICAL PHYSICS
- Moving beyond Watson–Crick models of coarse grained DNA dynamics
- (2011) Margaret C. Linak et al. JOURNAL OF CHEMICAL PHYSICS
- Challenges and opportunities for structural DNA nanotechnology
- (2011) Andre V. Pinheiro et al. Nature Nanotechnology
- Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades
- (2011) L. Qian et al. SCIENCE
- A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality
- (2010) Alex Morriss-Andrews et al. JOURNAL OF CHEMICAL PHYSICS
- A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics
- (2010) Pablo D. Dans et al. Journal of Chemical Theory and Computation
- DNA Nanotweezers Studied with a Coarse-Grained Model of DNA
- (2010) Thomas E. Ouldridge et al. PHYSICAL REVIEW LETTERS
- Molecular pathways in DNA-DNA hybridization of surface-bound oligonucleotides
- (2010) Moritz Julian Hoefert et al. Soft Matter
- The self-assembly of DNA Holliday junctions studied with a minimal model
- (2009) Thomas E. Ouldridge et al. JOURNAL OF CHEMICAL PHYSICS
- Langevin thermostat for rigid body dynamics
- (2009) Ruslan L. Davidchack et al. JOURNAL OF CHEMICAL PHYSICS
- Reversible gels of patchy particles: Role of the valence
- (2009) John Russo et al. JOURNAL OF CHEMICAL PHYSICS
- Forward flux sampling for rare event simulations
- (2009) Rosalind J Allen et al. JOURNAL OF PHYSICS-CONDENSED MATTER
- Control of DNA Strand Displacement Kinetics Using Toehold Exchange
- (2009) David Yu Zhang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Multiscale modeling of emergent materials: biological and soft matter
- (2009) Teemu Murtola et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis
- (2009) E. J. Sambriski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sequence effects in the melting and renaturation of short DNA oligonucleotides: structure and mechanistic pathways
- (2008) E J Sambriski et al. JOURNAL OF PHYSICS-CONDENSED MATTER
- The role of collective motion in examples of coarsening and self-assembly
- (2008) Stephen Whitelam et al. Soft Matter
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started