RNA2DMut: a web tool for the design and analysis of RNA structure mutations

Ribonucleoprotein purification and characterization using RNA Mango

(2017) Shanker Shyam S. Panchapakesan et al.   RNA

RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

(2016) Zhipeng Lu et al.   CELL

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

(2016) Meghan Zubradt et al.   NATURE METHODS

EBV noncoding RNA EBER2 interacts with host RNA-binding proteins to regulate viral gene expression

(2016) Nara Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multifunctional non-coding Epstein–Barr virus encoded RNAs (EBERs) contribute to viral pathogenesis

(2016) Dai Iwakiri   VIRUS RESEARCH

Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell Culture

(2016) Tian Jiang et al.   PLoS One

Subtype-specific structural constraints in the evolution of influenza A virus hemagglutinin genes

(2016) Alexander P. Gultyaev et al.   Scientific Reports

Structural Features of a 3′ Splice Site in Influenza A

(2015) Jonathan L. Chen et al.   BIOCHEMISTRY

EBV Noncoding RNA Binds Nascent RNA to Drive Host PAX5 to Viral DNA

(2015) Nara Lee et al.   CELL

Functional roles of non-coding Y RNAs

(2015) Madzia P. Kowalski et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

The emerging role of lncRNAs in cancer

(2015) Maite Huarte   NATURE MEDICINE

Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq

(2015) Yiliang Ding et al.   Nature Protocols

A-to-I editing of coding and non-coding RNAs by ADARs

(2015) Kazuko Nishikura   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark

(2015) Meredith Corley et al.   NUCLEIC ACIDS RESEARCH

A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation

(2015) Marta Soszynska-Jozwiak et al.   PLoS One

Probing Xist RNA Structure in Cells Using Targeted Structure-Seq

(2015) Rui Fang et al.   PLoS Genetics

Describing the Structural Diversity within an RNA’s Ensemble

(2014) Joshua Martin   Entropy

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

(2014) Nathan A Siegfried et al.   NATURE METHODS

RNA families in Epstein–Barr virus

(2014) Walter N Moss et al.   RNA Biology

The dark matter rises: the expanding world of regulatory RNAs

(2013) Michael B. Clark et al.   Essays in Biochemistry

RNAstructure: web servers for RNA secondary structure prediction and analysis

(2013) Stanislav Bellaousov et al.   NUCLEIC ACIDS RESEARCH

The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin

(2012) Walter N. Moss et al.   PLoS One

The influenza A segment 7 mRNA 3′ splice site pseudoknot/hairpin family

(2012) Walter N. Moss et al.   RNA Biology

AUF1/hnRNP D is a novel protein partner of the EBER1 noncoding RNA of Epstein-Barr virus

(2012) N. Lee et al.   RNA

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Understanding the transcriptome through RNA structure

(2011) Yue Wan et al.   NATURE REVIEWS GENETICS

The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization

(2011) M. M. Duszczyk et al.   RNA

Identification of potential conserved RNA secondary structure throughout influenza A coding regions

(2011) W. N. Moss et al.   RNA

Epstein–Barr Virus, the Immune System, and Associated Diseases

(2011) Mei-Ru Chen   Frontiers in Microbiology

Folding and Finding RNA Secondary Structure

(2010) D. H. Mathews et al.   Cold Spring Harbor Perspectives in Biology

2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association

(2010) Sylvain Maenner et al.   PLOS BIOLOGY

Disease-Associated Mutations That Alter the RNA Structural Ensemble

(2010) Matthew Halvorsen et al.   PLoS Genetics

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

mRNA Localization: Gene Expression in the Spatial Dimension

(2009) Kelsey C. Martin et al.   CELL

Role of RNA structure in regulating pre-mRNA splicing

(2009) M. Bryan Warf et al.   TRENDS IN BIOCHEMICAL SCIENCES

3′ End Processing of a Long Nuclear-Retained Noncoding RNA Yields a tRNA-like Cytoplasmic RNA

(2008) Jeremy E. Wilusz et al.   CELL

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA