The 3′ Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin

Testing the Nearest Neighbor Model for Canonical RNA Base Pairs: Revision of GU Parameters

(2012) Jonathan L. Chen et al.   BIOCHEMISTRY

Pause on avian flu transmission studies

(2012) Ron A. M. Fouchier et al.   NATURE

Influenza A Virus Coding Regions Exhibit Host-Specific Global Ordered RNA Structure

(2012) Salvatore F. Priore et al.   PLoS One

Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy

(2012) X. Tan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The accumulation of influenza A virus segment 7 spliced mRNAs is regulated by the NS1 protein

(2011) N. C. Robb et al.   JOURNAL OF GENERAL VIROLOGY

Comprehensive survey and geometric classification of base triples in RNA structures

(2011) Amal S. Abu Almakarem et al.   NUCLEIC ACIDS RESEARCH

NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions

(2011) Y. V. Lerman et al.   RNA

Identification of potential conserved RNA secondary structure throughout influenza A coding regions

(2011) W. N. Moss et al.   RNA

Comparisons between Chemical Mapping and Binding to Isoenergetic Oligonucleotide Microarrays Reveal Unexpected Patterns of Binding to theBacillus subtilisRNase P RNA Specificity Domain

(2010) Ruiting Liang et al.   BIOCHEMISTRY

A Flexible RNA Backbone within the Polypyrimidine Tract Is Required for U2AF65 Binding and Pre-mRNA Splicing In Vivo

(2010) C. Chen et al.   MOLECULAR AND CELLULAR BIOLOGY

Designing Inhibitors of M2 Proton Channel against H1N1 Swine Influenza Virus

(2010) Qi-Shi Du et al.   PLoS One

Biochemical Characterization of Enzyme Fidelity of Influenza A Virus RNA Polymerase Complex

(2010) Shilpa Aggarwal et al.   PLoS One

A family of non-classical pseudoknots in influenza A and B viruses

(2010) Alexander P. Gultyaev et al.   RNA Biology

Predicting loop-helix tertiary structural contacts in RNA pseudoknots

(2010) S. Cao et al.   RNA

siRNA for Influenza Therapy

(2010) Sailen Barik   Viruses-Basel

Small Molecule Microarrays of RNA-Focused Peptoids Help Identify Inhibitors of a Pathogenic Group I Intron

(2009) Lucas P. Labuda et al.   ACS Chemical Biology

Binding of Short Oligonucleotides to RNA: Studies of the Binding of Common RNA Structural Motifs to Isoenergetic Microarrays

(2009) Elzbieta Kierzek   BIOCHEMISTRY

Secondary Structures for 5′ Regions of R2 Retrotransposon RNAs Reveal a Novel Conserved Pseudoknot and Regions that Evolve under Different Constraints

(2009) Elzbieta Kierzek et al.   JOURNAL OF MOLECULAR BIOLOGY

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

(2009) Douglas H. Turner et al.   NUCLEIC ACIDS RESEARCH

The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing

(2009) M. B. Warf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of RNA structure in regulating pre-mRNA splicing

(2009) M. Bryan Warf et al.   TRENDS IN BIOCHEMICAL SCIENCES

Temperature sensitivity on growth and/or replication of H1N1, H1N2 and H3N2 influenza A viruses isolated from pigs and birds in mammalian cells

(2009) Pascale Massin et al.   VETERINARY MICROBIOLOGY

The Thermodynamics of 3‘-Terminal Pyrene and Guanosine for the Design of Isoenergetic 2‘-O-Methyl-RNA-LNA Chimeric Oligonucleotide Probes of RNA Structure†

(2008) Anna Pasternak et al.   BIOCHEMISTRY

Solution Conformation and Thermodynamic Characteristics of RNA Binding by the Splicing Factor U2AF65

(2008) Jermaine L. Jenkins et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Two-Dimensional Combinatorial Screening Identifies Specific Aminoglycoside−RNA Internal Loop Partners

(2008) Matthew D. Disney et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function

(2008) Elzbieta Kierzek et al.   NUCLEIC ACIDS RESEARCH