Analysis of the core genome and pangenome of P seudomonas putida

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Antibiotic Resistance Determinants in a Pseudomonas putida Strain Isolated from a Hospital

(2014) Lázaro Molina et al.   PLoS One

Evaluation of seven housekeeping genes for multilocus sequence analysis of the genus Mesorhizobium: Resolving the taxonomic affiliation of the Cicer canariense rhizobia

(2014) Juan Pérez-Yépez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Coupling Between Protein Level Selection and Codon Usage Optimization in the Evolution of Bacteria and Archaea

(2014) W. Ran et al.   mBio

Restoration of a Mediterranean forest after a fire: bioremediation and rhizoremediation field-scale trial

(2014) Paloma Pizarro-Tobías et al.   Microbial Biotechnology

A Bacterial Swimmer with Two Alternating Speeds of Propagation

(2013) Matthias Theves et al.   BIOPHYSICAL JOURNAL

The metabolic cost of flagellar motion inPseudomonas putida KT2440

(2013) Esteban Martínez-García et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of plant growth-promoting bacteria-responsive proteins in cucumber roots under hypoxic stress using a proteomic approach

(2013) Jing Li et al.   Journal of Proteomics

Metabolic potential of the organic-solvent tolerantPseudomonas putida DOT-T1E deduced from its annotated genome

(2013) Zulema Udaondo et al.   Microbial Biotechnology

Enhanced Tolerance to Naphthalene and Enhanced Rhizoremediation Performance for Pseudomonas putida KT2440 via the NAH7 Catabolic Plasmid

(2012) Matilde Fernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant–bacteria interactions in the removal of pollutants

(2012) Ana Segura et al.   CURRENT OPINION IN BIOTECHNOLOGY

Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacteriumPseudomonas putida BIRD-1

(2012) Amalia Roca et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of reciprocal adhesion genes in pathogenic and non-pathogenicPseudomonas

(2012) Estrella Duque et al.   ENVIRONMENTAL MICROBIOLOGY

The Entner-Doudoroff pathway empowersPseudomonas putida KT2440 with a high tolerance to oxidative stress

(2012) Max Chavarría et al.   ENVIRONMENTAL MICROBIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics

(2011) Sarah Frank et al.   ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of the Nicotine-Degrading Pseudomonas putida Strain S16

(2011) H. Yu et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of Pseudomonas putida Idaho, a Unique Organic-Solvent-Tolerant Bacterium

(2011) F. Tao et al.   JOURNAL OF BACTERIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome

(2011) K. A. Karberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A process optimization for bio-catalytic production of substituted catechols (3-nitrocatechol and 3-methylcatechol

(2010) Dhan Prakash et al.   BMC BIOTECHNOLOGY

Potential of the TCE-degrading endophyte Pseudomonas putida W619-TCE to improve plant growth and reduce TCE phytotoxicity and evapotranspiration in poplar cuttings

(2010) Nele Weyens et al.   ENVIRONMENTAL POLLUTION

Complete Genome of the Plant Growth-Promoting Rhizobacterium Pseudomonas putida BIRD-1

(2010) M. A. Matilla et al.   JOURNAL OF BACTERIOLOGY

Discovery of an operon that participates in agmatine metabolism and regulates biofilm formation inPseudomonas aeruginosa

(2010) Bryan J. Williams et al.   MOLECULAR MICROBIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Predicting Gene Expression Level from Relative Codon Usage Bias: An Application to Escherichia coli Genome

(2009) U. Roymondal et al.   DNA RESEARCH

Modulation of cellular function by polyamines

(2009) Kazuei Igarashi et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Bacterial phosphate metabolism and its application to phosphorus recovery and industrial bioprocesses

(2009) Ryuichi Hirota et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Transgenic expression of glucose dehydrogenase inAzotobacter vinelandiienhances mineral phosphate solubilization and growth of sorghum seedlings

(2009) Burla Sashidhar et al.   Microbial Biotechnology

Bioremediation, a broad perspective

(2009) Pieter van Dillewijn et al.   Microbial Biotechnology

Analysis of Dibenzothiophene Desulfurization in a Recombinant Pseudomonas putida Strain

(2008) J. Calzada et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Dual regulation of zwf-1 by both 2-keto-3-deoxy-6-phosphogluconate and oxidative stress in Pseudomonas putida

(2008) J. Kim et al.   MICROBIOLOGY-SGM