Coupling Between Protein Level Selection and Codon Usage Optimization in the Evolution of Bacteria and Archaea

Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity

(2013) S. A. Shabalina et al.   NUCLEIC ACIDS RESEARCH

Differential Translation Tunes Uneven Production of Operon-Encoded Proteins

(2013) Tessa E.F. Quax et al.   Cell Reports

Contributions of Speed and Accuracy to Translational Selection in Bacteria

(2012) Wenqi Ran et al.   PLoS One

A selective force favoring increased G+C content in bacterial genes

(2012) R. Raghavan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Balanced Codon Usage Optimizes Eukaryotic Translational Efficiency

(2012) Wenfeng Qian et al.   PLoS Genetics

Computational methods for Gene Orthology inference

(2011) D. M. Kristensen et al.   BRIEFINGS IN BIOINFORMATICS

Nature and Intensity of Selection Pressure on CRISPR-Associated Genes

(2011) N. Takeuchi et al.   JOURNAL OF BACTERIOLOGY

The Influence of Anticodon-Codon Interactions and Modified Bases on Codon Usage Bias in Bacteria

(2010) W. Ran et al.   MOLECULAR BIOLOGY AND EVOLUTION

Constraints and plasticity in genome and molecular-phenome evolution

(2010) Eugene V. Koonin et al.   NATURE REVIEWS GENETICS

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Forces that influence the evolution of codon bias

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

General Rules for Optimal Codon Choice

(2009) Ruth Hershberg et al.   PLoS Genetics

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures

(2008) Nina Stoletzki   BMC EVOLUTIONARY BIOLOGY

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

(2008) P. S. Novichkov et al.   JOURNAL OF BACTERIOLOGY

Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage

(2008) P. G. Higgs et al.   MOLECULAR BIOLOGY AND EVOLUTION

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes

(2008) P. S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

Evolution of protein-coding genes in Drosophila

(2008) Amanda M. Larracuente et al.   TRENDS IN GENETICS