Characterization of the stromatolite microbiome from Little Darby Island, The Bahamas using predictive and whole shotgun metagenomic analysis

Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling

(2015) J. M. Mobberley et al.   Scientific Reports

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)

(2015) Adina Howe et al.   Frontiers in Microbiology

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

(2015) Yan He et al.   Microbiome

Limnology of Pavilion Lake, B. C., Canada – Characterization of a microbialite forming environment

(2015) Darlene S. S. Lim et al.   Fundamental and Applied Limnology

Stromatolitic knobs in Storr's Lake (San Salvador, Bahamas): a model system for formation and alteration of laminae

(2015) C. Dupraz et al.   Geobiology

Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada

(2014) J. A. Russell et al.   Geobiology

Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

(2014) Chris L. Dupont et al.   PLoS One

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

Tufa stromatolite ecosystems on the South African south coast

(2014) Renzo Perissinotto et al.   SOUTH AFRICAN JOURNAL OF SCIENCE

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Active eukaryotes in microbialites from Highborne Cay, Bahamas and Hamelin Pool (Shark Bay), Australia

(2013) Virginia P Edgcomb et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Metabolic potential of lithifying cyanobacteria-dominated thrombolitic mats

(2013) Jennifer M. Mobberley et al.   PHOTOSYNTHESIS RESEARCH

The Discovery of Stromatolites Developing at 3570 m above Sea Level in a High-Altitude Volcanic Lake Socompa, Argentinean Andes

(2013) María E. Farías et al.   PLoS One

Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific

(2013) Dominik Schneider et al.   PLoS One

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

N2 fixation rates and associated diversity (nifH) of microbialite and mat-forming consortia from different aquatic environments in Mexico

(2012) Y Beltrán et al.   AQUATIC MICROBIAL ECOLOGY

Biofilm formation by haloarchaea

(2012) Sabrina Fröls et al.   ENVIRONMENTAL MICROBIOLOGY

Microbialite genetic diversity and composition relate to environmental variables

(2012) Carla M. Centeno et al.   FEMS MICROBIOLOGY ECOLOGY

Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems

(2012) Adrian-Ştefan Andrei et al.   FEMS MICROBIOLOGY LETTERS

Inside the alkalinity engine: the role of electron donors in the organomineralization potential of sulfate-reducing bacteria

(2012) K. L. Gallagher et al.   Geobiology

Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome

(2012) R. Eric Collins et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms

(2012) Jiemeng Liu et al.   NUCLEIC ACIDS RESEARCH

Metagenomic and Metabolic Profiling of Nonlithifying and Lithifying Stromatolitic Mats of Highborne Cay, The Bahamas

(2012) Christina L. M. Khodadad et al.   PLoS One

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing

(2011) Jennifer M. Mobberley et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales

(2011) Sanae Sakai et al.   PLoS One

Environmental controls on microbial community cycling in modern marine stromatolites

(2011) Emily M. Bowlin et al.   SEDIMENTARY GEOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas

(2010) K. L. MYSHRALL et al.   Geobiology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives

(2010) Jesse R. Zaneveld et al.   NUCLEIC ACIDS RESEARCH

The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A ‘Multi-Omic’ Study of Seasonal and Diel Temporal Variation

(2010) Jack A. Gilbert et al.   PLoS One

Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain

(2010) Fernando Santos et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Microbial Species Richness and Metabolic Activities in Hypersaline Microbial Mats: Insight into Biosignature Formation Through Lithification

(2009) Laura K. Baumgartner et al.   ASTROBIOLOGY

Classification and biomarker identification using gene network modules and support vector machines

(2009) Malik Yousef et al.   BMC BIOINFORMATICS

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas

(2009) Laura K. Baumgartner et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay

(2009) M. A. ALLEN et al.   Geobiology

Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas

(2009) Jamie S Foster et al.   ISME Journal

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

(2009) Iain Anderson et al.   PLoS One

Processes of carbonate precipitation in modern microbial mats

(2008) Christophe Dupraz et al.   EARTH-SCIENCE REVIEWS

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay

(2008) Falicia Goh et al.   ISME Journal