Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

(2013) Alexander Eiler et al.   ENVIRONMENTAL MICROBIOLOGY

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

Glycolytic strategy as a tradeoff between energy yield and protein cost

(2013) A. Flamholz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thermodynamic Contribution to the Regulation of Electron Transfer in the Na+-Pumping NADH:Quinone Oxidoreductase from Vibrio cholerae

(2012) Yashvin Neehaul et al.   BIOCHEMISTRY

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

Modeling the combined impact of changing climate and changing nutrient loads on the Baltic Sea environment in an ensemble of transient simulations for 1961–2099

(2012) H. E. M. Meier et al.   CLIMATE DYNAMICS

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

(2012) Lisa Zeigler Allen et al.   ISME Journal

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

(2012) Barbara J Campbell et al.   ISME Journal

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Complete Genome Sequence of Strain IMCC9063, Belonging to SAR11 Subgroup 3, Isolated from the Arctic Ocean

(2011) H.-M. Oh et al.   JOURNAL OF BACTERIOLOGY

Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat

(2011) Ian Hewson et al.   LIMNOLOGY AND OCEANOGRAPHY

Five Questions about Non-Mevalonate Isoprenoid Biosynthesis

(2011) Audrey R. Odom   PLoS Pathogens

METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics

(2010) Johannes Goll et al.   BIOINFORMATICS

Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families

(2010) P. V. Patel et al.   GENOME RESEARCH

Metagenomic Sequencing of an In Vitro-Simulated Microbial Community

(2010) Jenna L. Morgan et al.   PLoS One

The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data

(2010) David M. Tanenbaum et al.   Standards in Genomic Sciences

The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity

(2009) M. S. Schwalbach et al.   ENVIRONMENTAL MICROBIOLOGY

Quantifying environmental adaptation of metabolic pathways in metagenomics

(2009) T. A. Gianoulis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vertical mixing in the Baltic Sea and consequences for eutrophication – A review

(2009) Jan Hinrich Reissmann et al.   PROGRESS IN OCEANOGRAPHY

Scaling laws in functional genome content across prokaryotic clades and lifestyles

(2009) Nacho Molina et al.   TRENDS IN GENETICS

Infrequent marine–freshwater transitions in the microbial world

(2009) Ramiro Logares et al.   TRENDS IN MICROBIOLOGY

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE