Dockground: A comprehensive data resource for modeling of protein complexes
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Title
Dockground: A comprehensive data resource for modeling of protein complexes
Authors
Keywords
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Journal
PROTEIN SCIENCE
Volume 27, Issue 1, Pages 172-181
Publisher
Wiley
Online
2017-09-11
DOI
10.1002/pro.3295
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- (2016) Tanggis Bohnuud et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
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- Structural templates for comparative protein docking
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- (2014) Donald Petrey et al. Annual Review of Biophysics
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- (2014) Ilya A. Vakser BIOPHYSICAL JOURNAL
- Non-Redundant Unique Interface Structures as Templates for Modeling Protein Interactions
- (2014) Engin Cukuroglu et al. PLoS One
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- The scoring of poses in protein-protein docking: current capabilities and future directions
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- (2013) Ilya A Vakser CURRENT OPINION IN STRUCTURAL BIOLOGY
- Scoring functions for protein–protein interactions
- (2013) Iain H Moal et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Towards a detailed atlas of protein–protein interactions
- (2013) Roberto Mosca et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
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- (2013) Andras Szilagyi et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Toward a “Structural BLAST”: Using structural relationships to infer function
- (2013) Fabian Dey et al. PROTEIN SCIENCE
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- (2013) Petras J. Kundrotas et al. PROTEIN SCIENCE
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- Protein-protein docking benchmark version 4.0
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