Protein Docking by the Interface Structure Similarity: How Much Structure Is Needed?

Structural conservation of druggable hot spots in protein-protein interfaces

(2011) D. Kozakov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New benchmark metrics for protein-protein docking methods

(2011) Mu Gao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment

(2010) Janez Konc et al.   BIOINFORMATICS

Accounting for conformational changes during protein–protein docking

(2010) Martin Zacharias   CURRENT OPINION IN STRUCTURAL BIOLOGY

Protein interface conservation across structure space

(2010) Q. C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation

(2010) A. D. Wilkins et al.   PROTEIN SCIENCE

Docking by structural similarity at protein-protein interfaces

(2010) Rohita Sinha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Docking and scoring protein interactions: CAPRI 2009

(2010) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling

(2010) Petras J. Kundrotas et al.   PLoS Computational Biology

3D-SURFER: software for high-throughput protein surface comparison and analysis

(2009) David La et al.   BIOINFORMATICS

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Predicting 3D Structures of Protein-Protein Complexes

(2008) Ilya Vakser et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Homology-based modeling of 3D structures of protein–protein complexes using alignments of modified sequence profiles

(2008) Petras J. Kundrotas et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Architectures and Functional Coverage of Protein–Protein Interfaces

(2008) Nurcan Tuncbag et al.   JOURNAL OF MOLECULAR BIOLOGY

The size of the intermolecular energy funnel in protein-protein interactions

(2008) Jagtar Hunjan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS