Global and local structural similarity in protein-protein complexes: Implications for template-based docking

Low-resolution structural modeling of protein interactome

(2013) Ilya A Vakser   CURRENT OPINION IN STRUCTURAL BIOLOGY

Predicting protein-protein interface residues using local surface structural similarity

(2012) Rafael A Jordan et al.   BMC BIOINFORMATICS

Structure-based prediction of protein–protein interactions on a genome-wide scale

(2012) Qiangfeng Cliff Zhang et al.   NATURE

Protein Docking by the Interface Structure Similarity: How Much Structure Is Needed?

(2012) Rohita Sinha et al.   PLoS One

Templates are available to model nearly all complexes of structurally characterized proteins

(2012) P. J. Kundrotas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Challenges for the prediction of macromolecular interactions

(2011) Mark N Wass et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Critical assessment of methods of protein structure prediction (CASP)-round IX

(2011) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination

(2011) Srayanta Mukherjee et al.   STRUCTURE

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment

(2010) Janez Konc et al.   BIOINFORMATICS

Accounting for conformational changes during protein–protein docking

(2010) Martin Zacharias   CURRENT OPINION IN STRUCTURAL BIOLOGY

Protein interface conservation across structure space

(2010) Q. C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Docking by structural similarity at protein-protein interfaces

(2010) Rohita Sinha et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Docking and scoring protein interactions: CAPRI 2009

(2010) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting 3D Structures of Protein-Protein Complexes

(2008) Ilya Vakser et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Homology-based modeling of 3D structures of protein–protein complexes using alignments of modified sequence profiles

(2008) Petras J. Kundrotas et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Experimental and Computational Analyses of the Energetic Basis for Dual Recognition of Immunity Proteins by Colicin Endonucleases

(2008) Anthony H. Keeble et al.   JOURNAL OF MOLECULAR BIOLOGY

The size of the intermolecular energy funnel in protein-protein interactions

(2008) Jagtar Hunjan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS