Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada
Authors
Keywords
Mycobacterium tuberculosis, Nunavut, Tuberculosis, Antimicrobial resistance, Canada, Phylogenetics, Quebec, Infectious disease epidemiology
Journal
PLoS One
Volume 12, Issue 10, Pages e0185656
Publisher
Public Library of Science (PLoS)
Online
2017-10-06
DOI
10.1371/journal.pone.0185656
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review
- (2016) Hollie-Ann Hatherell et al. BMC Medicine
- Substantial molecular evolution and mutation rates in prolonged latent Mycobacterium tuberculosis infection in humans
- (2016) Troels Lillebaek et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country
- (2016) David Stucki et al. JOURNAL OF CLINICAL MICROBIOLOGY
- PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
- (2016) Bruno Ribeiro-Gonçalves et al. NUCLEIC ACIDS RESEARCH
- Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
- (2016) Louise J Pankhurst et al. Lancet Respiratory Medicine
- Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis
- (2016) Andrea D. Tyler et al. PLoS One
- Tracing Mycobacterium tuberculosis transmission by whole genome sequencing in a high incidence setting: a retrospective population-based study in East Greenland
- (2016) K. Bjorn-Mortensen et al. Scientific Reports
- IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.
- (2015) Bhavjinder K. Dhillon et al. NUCLEIC ACIDS RESEARCH
- Population genomics ofMycobacterium tuberculosisin the Inuit
- (2015) Robyn S. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- Optimization of Standard In-House 24-Locus Variable-Number Tandem-Repeat Typing for Mycobacterium tuberculosis and Its Direct Application to Clinical Material
- (2014) J. L. de Beer et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Marked Microevolution of a Unique Mycobacterium tuberculosis Strain in 17 Years of Ongoing Transmission in a High Risk Population
- (2014) Carolina Mehaffy et al. PLoS One
- Consequences of genomic diversity in Mycobacterium tuberculosis
- (2014) Mireia Coscolla et al. SEMINARS IN IMMUNOLOGY
- A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
- (2014) Francesc Coll et al. Nature Communications
- Automated analysis of phylogenetic clusters
- (2013) Manon Ragonnet-Cronin et al. BMC BIOINFORMATICS
- Tuberculosis in Nunavut: looking back, moving forward
- (2013) P. Orr CANADIAN MEDICAL ASSOCIATION JOURNAL
- Epidemiological evaluation of spatiotemporal and genotypic clustering of Mycobacterium tuberculosis in Ontario, Canada
- (2013) A. R. Tuite et al. INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE
- Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
- (2013) Iñaki Comas et al. NATURE GENETICS
- Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
- (2013) Christopher B Ford et al. NATURE GENETICS
- Multidrug and Extensively Drug-resistant Tuberculosis in Canada 1997–2008: Demographic and Disease Characteristics
- (2013) Jessica Minion et al. PLoS One
- SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
- (2012) Francesc Coll et al. BIOINFORMATICS
- A NEW BAYESIAN METHOD FOR FITTING EVOLUTIONARY MODELS TO COMPARATIVE DATA WITH INTRASPECIFIC VARIATION
- (2012) Liam J. Revell et al. EVOLUTION
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- A Ferritin Mutant of Mycobacterium tuberculosis Is Highly Susceptible to Killing by Antibiotics and Is Unable To Establish a Chronic Infection in Mice
- (2012) Ruchi Pandey et al. INFECTION AND IMMUNITY
- Mycobacterium tuberculosis Requires Phosphate-Responsive Gene Regulation To Resist Host Immunity
- (2012) Anna D. Tischler et al. INFECTION AND IMMUNITY
- Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
- (2012) Timothy M Walker et al. LANCET INFECTIOUS DISEASES
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Tuberculosis in Nunavut: a century of failure
- (2011) N. MacDonald et al. CANADIAN MEDICAL ASSOCIATION JOURNAL
- Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
- (2011) Jennifer L. Gardy et al. NEW ENGLAND JOURNAL OF MEDICINE
- PHAST: A Fast Phage Search Tool
- (2011) Y. Zhou et al. NUCLEIC ACIDS RESEARCH
- Dispersal of Mycobacterium tuberculosis via the Canadian fur trade
- (2011) C. S. Pepperell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microevolution of Mycobacterium tuberculosis in a Tuberculosis Patient
- (2010) S. A. M. Al-Hajoj et al. JOURNAL OF CLINICAL MICROBIOLOGY
- MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria
- (2010) T. Weniger et al. NUCLEIC ACIDS RESEARCH
- The Mycobacterium tuberculosis membrane protein Rv0180c: Evaluation of peptide sequences implicated in mycobacterial invasion of two human cell lines
- (2010) Silvia Marcela Cáceres et al. PEPTIDES
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Evaluation of 24 locus MIRU-VNTR genotyping of Mycobacterium tuberculosis isolates in Canada
- (2010) Sara Christianson et al. TUBERCULOSIS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
- (2009) Alexandre P Francisco et al. BMC BIOINFORMATICS
- Tuberculosis Drug Resistance Mutation Database
- (2009) Andreas Sandgren et al. PLOS MEDICINE
- Evaluation and Strategy for Use of MIRU-VNTRplus, a Multifunctional Database for Online Analysis of Genotyping Data and Phylogenetic Identification of Mycobacterium tuberculosis Complex Isolates
- (2008) C. Allix-Beguec et al. JOURNAL OF CLINICAL MICROBIOLOGY
- High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography
- (2008) Ruth Hershberg et al. PLOS BIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started