Meta-analysis of salt-related gene expression profiles identifies common signatures of salt stress responses in Arabidopsis

Competition, salinity, and clonal growth in native and introduced irises

(2016) S. Mopper et al.   AMERICAN JOURNAL OF BOTANY

Polyamine oxidase 5loss-of-function mutations inArabidopsis thalianatrigger metabolic and transcriptional reprogramming and promote salt stress tolerance

(2016) Xavier Zarza et al.   PLANT CELL AND ENVIRONMENT

Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis

(2016) Joshua S. Rest et al.   PLANT JOURNAL

Expression pattern similarities support the prediction of orthologs retaining common functions after gene duplication events

(2016) Malay Das et al.   PLANT PHYSIOLOGY

Meta-analysis of the differentially expressed microRNA profiles in nasopharyngeal carcinoma

(2016) Junwen Luan et al.   Oncotarget

Physiological Basis and Transcriptional Profiling of Three Salt-Tolerant Mutant Lines of Rice

(2016) Concha Domingo et al.   Frontiers in Plant Science

ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress

(2016) Nobuhiro Suzuki et al.   PLoS One

Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii

(2016) Qiuling He et al.   Scientific Reports

Genome-wide Identification of WRKY Genes in the Desert Poplar Populus euphratica and Adaptive Evolution of the Genes in Response to Salt Stress

(2015) Jianchao Ma et al.   Evolutionary Bioinformatics

Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases

(2015) Dmitriy Gorenshteyn et al.   IMMUNITY

bZIP17 and bZIP60 Regulate the Expression of BiP3 and Other Salt Stress Responsive Genes in an UPR-Independent Manner inArabidopsis thaliana

(2015) Carlos Henriquez-Valencia et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

A salt-regulated peptide derived from the CAP superfamily protein negatively regulates salt-stress tolerance inArabidopsis

(2015) Pei-Shan Chien et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plant hormones in salt stress tolerance

(2015) Hojin Ryu et al.   JOURNAL OF PLANT BIOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Chrysanthemum WRKY gene CmWRKY17 negatively regulates salt stress tolerance in transgenic chrysanthemum and Arabidopsis plants

(2015) Peiling Li et al.   PLANT CELL REPORTS

Nuclear-localized AtHSPR links abscisic acid-dependent salt tolerance and antioxidant defense in Arabidopsis

(2015) Tao Yang et al.   PLANT JOURNAL

Identification of Arabidopsis Candidate Genes in Response to Biotic and Abiotic Stresses Using Comparative Microarrays

(2015) Arjun Sham et al.   PLoS One

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis

(2014) Feng Ding et al.   BMC GENOMICS

Exogenous jasmonic acid can enhance tolerance of wheat seedlings to salt stress

(2014) ZongBo Qiu et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Salt stress and senescence: identification of cross-talk regulatory components

(2014) Annapurna Devi Allu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Unraveling the effect of arsenic on the modelMedicago-Ensiferinteraction: a transcriptomic meta-analysis

(2014) Alejandro Lafuente et al.   NEW PHYTOLOGIST

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic profiling revealed an important role of cell wall remodeling and ethylene signaling pathway during salt acclimation in Arabidopsis

(2014) Xiaoyan Shen et al.   PLANT MOLECULAR BIOLOGY

Deficiency of phytochrome B alleviates chilling-induced photoinhibition in rice

(2013) Jian-Chao Yang et al.   AMERICAN JOURNAL OF BOTANY

Multiple roles of the transcription factor AtMYBR1/AtMYB44 in ABA signaling, stress responses, and leaf senescence

(2013) Masrur R Jaradat et al.   BMC PLANT BIOLOGY

Microarray Analysis of Transcriptional Responses to Abscisic Acid and Salt Stress in Arabidopsis thaliana

(2013) Yujia Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Brassinosteroids in plant developmental signaling networks

(2013) Hojin Ryu et al.   JOURNAL OF PLANT BIOLOGY

Comparative analyses of stress-responsive genes in Arabidopsis thaliana: insight from genomic data mining, functional enrichment, pathway analysis and phenomics

(2013) Mahantesha Naika et al.   Molecular BioSystems

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

A Spatio-Temporal Understanding of Growth Regulation during the Salt Stress Response in Arabidopsis

(2013) Y. Geng et al.   PLANT CELL

Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses

(2013) Raghvendra Sharma et al.   PLANTA

Transcriptomic and Physiological Variations of Three Arabidopsis Ecotypes in Response to Salt Stress

(2013) Yanping Wang et al.   PLoS One

Influence of silicon and nano-silicon on salinity tolerance of cherry tomatoes (Solanum lycopersicum L.) at early growth stage

(2013) Maryam Haghighi et al.   SCIENTIA HORTICULTURAE

Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants

(2013) Mohammed Nuruzzaman et al.   Frontiers in Microbiology

Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals

(2013) Megan C. Shelden et al.   Frontiers in Plant Science

Robust rank aggregation for gene list integration and meta-analysis

(2012) Raivo Kolde et al.   BIOINFORMATICS

Bioengineering for Salinity Tolerance in Plants: State of the Art

(2012) Pradeep K. Agarwal et al.   MOLECULAR BIOTECHNOLOGY

Transcriptome Analyses of a Salt-Tolerant Cytokinin-Deficient Mutant Reveal Differential Regulation of Salt Stress Response by Cytokinin Deficiency

(2012) Rie Nishiyama et al.   PLoS One

AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis

(2012) S. Vanderauwera et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The spectral extent of chorus in the off-equatorial magnetosphere

(2012) N. L. Bunch et al.   JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS

Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses

(2011) Daofeng Li et al.   BMC PLANT BIOLOGY

Global gene expression analysis of transgenic, mannitol-producing, and salt-tolerant Arabidopsis thaliana indicates widespread changes in abiotic and biotic stress-related genes

(2011) Zhulong Chan et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice

(2011) Lakshmi P. Manavalan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparison of salt stress resistance genes in transgenic Arabidopsis thaliana indicates that extent of transcriptomic change may not predict secondary phenotypic or fitness effects

(2011) Zhulong Chan et al.   PLANT BIOTECHNOLOGY JOURNAL

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

JAZ repressors and the orchestration of phytohormone crosstalk

(2011) Kemal Kazan et al.   TRENDS IN PLANT SCIENCE

Evolutionary and ecological genomics of non-model plants

(2011) Bao-Hua SONG et al.   Journal of Systematics and Evolution

Brassinosteroid-mediated stress tolerance in Arabidopsis shows interactions with abscisic acid, ethylene and salicylic acid pathways

(2010) Uday K Divi et al.   BMC PLANT BIOLOGY

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response

(2010) Tsai-Hung Hsieh et al.   PLANTA

ABA perception and signalling

(2010) Agepati S. Raghavendra et al.   TRENDS IN PLANT SCIENCE

The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networks involved in abiotic stress resistance

(2009) Oksoon Yang et al.   GENE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Brassinosteroid: a biotechnological target for enhancing crop yield and stress tolerance

(2009) Uday K. Divi et al.   New Biotechnology

The primary signaling outputs of brassinosteroids are regulated by abscisic acid signaling

(2009) S. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets

(2008) Adaikalavan Ramasamy et al.   PLOS MEDICINE