De novo RNA sequencing and analysis of the transcriptome of signalgrass (Urochloa decumbens) roots exposed to aluminum

Genome-wide distribution comparative and composition analysis of the SSRs in Poaceae

(2015) Yi Wang et al.   BMC GENETICS

Combination Patterns of Major R Genes Determine the Level of Resistance to the M. oryzae in Rice (Oryza sativa L.)

(2015) Yunyu Wu et al.   PLoS One

Evaluation of aluminum resistance in hybrids of Brachiaria decumbens Stapf.

(2015) Keise Mara Belmonte de Oliveira et al.   Crop Breeding and Applied Biotechnology

De Novo Assembly and Discovery of Genes That Are Involved in Drought Tolerance in Tibetan Sophora moorcroftiana

(2015) Huie Li et al.   PLoS One

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

(2014) Leonardo Salgado et al.   BMC GENOMICS

De Novo Assembly of the Common Bean Transcriptome Using Short Reads for the Discovery of Drought-Responsive Genes

(2014) Jing Wu et al.   PLoS One

Ecological and evolutionary significance of genomic GC content diversity in monocots

(2014) Petr Šmarda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosome duplication in Brachiaria (A. Rich.) Stapf allows intraspecific crosses

(2014) C. Simioni et al.   Crop Breeding and Applied Biotechnology

Differential aluminum resistance in Brachiaria species

(2013) Catalina Arroyave et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

De novo transcriptome sequencing and comparative analysis of differentially expressed genes in Gossypium aridum under salt stress

(2013) Peng Xu et al.   GENE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species

(2013) Kajal Kumari et al.   PLoS One

De Novo Transcriptome Assembly for the Tropical Grass Panicum maximum Jacq

(2013) Guilherme Toledo-Silva et al.   PLoS One

Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

(2012) Jialei Duan et al.   BMC GENOMICS

Review Genetic and molecular mechanisms of aluminum tolerance in plants

(2012) C.C. Simões et al.   GENETICS AND MOLECULAR RESEARCH

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research

(2012) Eli Meyer et al.   PLANT JOURNAL

Aluminum tolerance measured by root growth and mucilage protection inUrochloa brizanthaandUrochloa decumbens

(2012) Flávia T. Ramos et al.   Journal of Plant Interactions

Aluminium-induced changes in root epidermal cell patterning, a distinctive feature of hyperresistance to Al in Brachiaria decumbens

(2011) Catalina Arroyave et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice

(2011) Chao-Feng Huang et al.   PLANT JOURNAL

The Receptor-Like Kinase SERK3/BAK1 Is Required for Basal Resistance against the Late Blight Pathogen Phytophthora infestans in Nicotiana benthamiana

(2011) Angela Chaparro-Garcia et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

The role of the root apoplast in aluminium-induced inhibition of root elongation and in aluminium resistance of plants: a review

(2010) Walter J. Horst et al.   ANNALS OF BOTANY

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

PRGdb: a bioinformatics platform for plant resistance gene analysis

(2009) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize

(2009) Lyza G. Maron et al.   PLANT JOURNAL