Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research

Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences

(2011) Yunwei Zhang et al.   GENETICA

Comparative Transcriptomics of Eastern African Cichlid Fishes Shows Signs of Positive Selection and a Large Contribution of Untranslated Regions to Genetic Diversity

(2011) Laura Baldo et al.   Genome Biology and Evolution

Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes

(2011) Maurice Bosch et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide atlas of transcription during maize development

(2011) Rajandeep S. Sekhon et al.   PLANT JOURNAL

Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass

(2011) Chunxiang Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary genetics of plant adaptation

(2011) Jill T. Anderson et al.   TRENDS IN GENETICS

Plant cell wall polymers as precursors for biofuels

(2010) Markus Pauly et al.   CURRENT OPINION IN PLANT BIOLOGY

Advances in modifying lignin for enhanced biofuel production

(2010) Blake A Simmons et al.   CURRENT OPINION IN PLANT BIOLOGY

Complete Switchgrass Genetic Maps Reveal Subgenome Collinearity, Preferential Pairing and Multilocus Interactions

(2010) M. Okada et al.   GENETICS

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Xylan Biosynthesis: News from the Grass

(2010) A. Faik   PLANT PHYSIOLOGY

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Update on Mechanisms of Plant Cell Wall Biosynthesis: How Plants Make Cellulose and Other (1->4)- -D-Glycans

(2010) N. C. Carpita   PLANT PHYSIOLOGY

Feedstocks for Lignocellulosic Biofuels

(2010) C. Somerville et al.   SCIENCE

Genome-size Variation in Switchgrass (Panicum virgatum): Flow Cytometry and Cytology Reveal Rampant Aneuploidy

(2010) Denise E. Costich et al.   Plant Genome

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

A dynamic gene expression atlas covering the entire life cycle of rice

(2009) Lei Wang et al.   PLANT JOURNAL

Fast Statistical Alignment

(2009) Robert K. Bradley et al.   PLoS Computational Biology

SHRiMP: Accurate Mapping of Short Color-space Reads

(2009) Stephen M. Rumble et al.   PLoS Computational Biology

Cellulosic Biofuels

(2008) Andrew Carroll et al.   Annual Review of Plant Biology

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Unique aspects of the grass cell wall

(2008) J VOGEL   CURRENT OPINION IN PLANT BIOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Genomics of cellulosic biofuels

(2008) Edward M. Rubin   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL

Comparative Genomics in Switchgrass Using 61,585 High-Quality Expressed Sequence Tags

(2008) Christian M. Tobias et al.   Plant Genome