Phytopathogen-induced changes to plant methylomes

Cyst Nematode Parasitism Induces Dynamic Changes in the Root Epigenome

(2017) Tarek Hewezi et al.   PLANT PHYSIOLOGY

Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism

(2017) Sarbottam Piya et al.   PLANT PHYSIOLOGY

Mapping Transcriptional Networks in Plants: Data-Driven Discovery of Novel Biological Mechanisms

(2016) Allison Gaudinier et al.   Annual Review of Plant Biology

Arabidopsis miR827 mediates post-transcriptional gene silencing of its ubiquitin E3 ligase target gene in the syncytium of the cyst nematodeHeterodera schachtiito enhance susceptibility

(2016) Tarek Hewezi et al.   PLANT JOURNAL

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

(2016) Ana López Sánchez et al.   PLANT JOURNAL

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis

(2016) Jian-Hua Zhao et al.   Scientific Reports

Replication of a pathogenic non-coding RNA increases DNA methylation in plants associated with a bromodomain-containing viroid-binding protein

(2016) Dian-Qiu Lv et al.   Scientific Reports

Soybean kinome: functional classification and gene expression patterns

(2015) Jinyi Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA methylation pathways and their crosstalk with histone methylation

(2015) Jiamu Du et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Cellular Signaling Pathways and Posttranslational Modifications Mediated by Nematode Effector Proteins: Figure 1.

(2015) Tarek Hewezi   PLANT PHYSIOLOGY

The Methylome of Soybean Roots during the Compatible Interaction with the Soybean Cyst Nematode

(2015) Aditi Rambani et al.   PLANT PHYSIOLOGY

Methylome analysis reveals an important role for epigenetic changes in the regulation of theArabidopsisresponse to phosphate starvation

(2015) Lenin Yong-Villalobos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Tomato yellow leaf curl virus resistance by Ty-1 involves increased cytosine methylation of viral genomes and is compromised by cucumber mosaic virus infection

(2014) P. Butterbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Regulation in Plant Responses to the Environment

(2014) D. C. Baulcombe et al.   Cold Spring Harbor Perspectives in Biology

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

(2013) M. Regulski et al.   GENOME RESEARCH

Arabidopsis Double-Stranded RNA Binding Protein DRB3 Participates in Methylation-Mediated Defense against Geminiviruses

(2013) P. Raja et al.   JOURNAL OF VIROLOGY

Geminivirus Rep protein interferes with the plant DNA methylation machinery and suppresses transcriptional gene silencing

(2013) Edgar Rodríguez-Negrete et al.   NEW PHYTOLOGIST

A pathogenic non-coding RNA induces changes in dynamic DNA methylation of ribosomal RNA genes in host plants

(2013) German Martinez et al.   NUCLEIC ACIDS RESEARCH

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA Silencing and Plant Viral Diseases

(2012) Ming-Bo Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing

(2012) Xiaoyan Li et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene duplication as a mechanism of genomic adaptation to a changing environment

(2012) F. A. Kondrashov   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Epigenome and Plant Development

(2011) Guangming He et al.   Annual Review of Plant Biology

Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly

(2011) S. Takuno et al.   MOLECULAR BIOLOGY AND EVOLUTION

BSCTV C2 Attenuates the Degradation of SAMDC1 to Suppress DNA Methylation-Mediated Gene Silencing inArabidopsis

(2011) Zhonghui Zhang et al.   PLANT CELL

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Research on plant abiotic stress responses in the post-genome era: past, present and future

(2010) Takashi Hirayama et al.   PLANT JOURNAL

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

RNA-mediated chromatin-based silencing in plants

(2009) Marjori Matzke et al.   CURRENT OPINION IN CELL BIOLOGY

Geminivirus AL2 and L2 Proteins Suppress Transcriptional Gene Silencing and Cause Genome-Wide Reductions in Cytosine Methylation

(2009) R. C. Buchmann et al.   JOURNAL OF VIROLOGY

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS