Meta-Analysis of the Transcriptome Reveals a Core Set of Shade-Avoidance Genes in Arabidopsis

Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light

(2016) Ullas V. Pedmale et al.   CELL

Convergence of CONSTITUTIVE PHOTOMORPHOGENESIS 1 and PHYTOCHROME INTERACTING FACTOR signalling during shade avoidance

(2016) Manuel Pacín et al.   NEW PHYTOLOGIST

Contrasting growth responses in lamina and petiole during neighbor detection depend on differential auxin responsiveness rather than different auxin levels

(2015) Mieke de Wit et al.   NEW PHYTOLOGIST

Spatial Regulation of the Gene Expression Response to Shade in Arabidopsis Seedlings

(2015) Kazumasa Nito et al.   PLANT AND CELL PHYSIOLOGY

Light Regulation of Plant Defense

(2014) Carlos L. Ballaré   Annual Review of Plant Biology

Plant proximity perception dynamically modulates hormone levels and sensitivity in Arabidopsis

(2014) Jordi Bou-Torrent et al.   JOURNAL OF EXPERIMENTAL BOTANY

Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis

(2014) Anne Pfeiffer et al.   Molecular Plant

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression

(2014) D. A. Korasick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The HY5-PIF Regulatory Module Coordinates Light and Temperature Control of Photosynthetic Gene Transcription

(2014) Gabriela Toledo-Ortiz et al.   PLoS Genetics

Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl

(2014) Eunkyoo Oh et al.   eLife

Photoreceptor Signaling Networks in Plant Responses to Shade

(2013) Jorge J. Casal   Annual Review of Plant Biology

COP1 re-accumulates in the nucleus under shade

(2013) Manuel Pacín et al.   PLANT JOURNAL

BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis

(2013) Shivakumar Sreeramulu et al.   PLANT JOURNAL

Basic Helix-Loop-Helix Transcription Factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 Are Negative Regulators of Jasmonate Responses in Arabidopsis

(2013) Y. Sasaki-Sekimoto et al.   PLANT PHYSIOLOGY

Abscisic Acid Regulates Axillary Bud Outgrowth Responses to the Ratio of Red to Far-Red Light

(2013) S. K. Reddy et al.   PLANT PHYSIOLOGY

Dynamics of the Shade-Avoidance Response in Arabidopsis

(2013) A. Ciolfi et al.   PLANT PHYSIOLOGY

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Linking photoreceptor excitation to changes in plant architecture

(2012) L. Li et al.   GENES & DEVELOPMENT

Phytochrome Signaling in Green Arabidopsis Seedlings: Impact Assessment of a Mutually Negative phyB–PIF Feedback Loop

(2012) Pablo Leivar et al.   Molecular Plant

Brassinosteroid, gibberellin and phytochrome impinge on a common transcription module in Arabidopsis

(2012) Ming-Yi Bai et al.   NATURE CELL BIOLOGY

Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

(2012) Eunkyoo Oh et al.   NATURE CELL BIOLOGY

Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network inArabidopsis

(2012) Pablo Leivar et al.   PLANT CELL

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

Stem Transcriptome Reveals Mechanisms to Reduce the Energetic Cost of Shade-Avoidance Responses in Tomato

(2012) J. I. Cagnola et al.   PLANT PHYSIOLOGY

Shade tolerance: when growing tall is not an option

(2012) Charlotte M.M. Gommers et al.   TRENDS IN PLANT SCIENCE

A Genome-Wide Association Study Identifies Variants Underlying the Arabidopsis thaliana Shade Avoidance Response

(2012) Daniele L. Filiault et al.   PLoS Genetics

Repression of shade-avoidance reactions by sunfleck induction of HY5 expression in Arabidopsis

(2011) Romina Sellaro et al.   PLANT JOURNAL

Genome-Wide Analysis of Light-Dependent Transcript Accumulation Patterns during Early Stages of Arabidopsis Seedling Deetiolation

(2011) F. Peschke et al.   PLANT PHYSIOLOGY

Comparative analysis of abscisic acid-regulated transcriptomes in Arabidopsis

(2010) A. Choudhury et al.   PLANT BIOLOGY

Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae

(2010) L. Carretero-Paulet et al.   PLANT PHYSIOLOGY

Cryptochrome as a Sensor of the Blue/Green Ratio of Natural Radiation in Arabidopsis

(2010) Romina Sellaro et al.   PLANT PHYSIOLOGY

Involvement of Auxin and Brassinosteroid in the Regulation of Petiole Elongation under the Shade

(2010) T. Kozuka et al.   PLANT PHYSIOLOGY

ABA perception and signalling

(2010) Agepati S. Raghavendra et al.   TRENDS IN PLANT SCIENCE

PIFs: pivotal components in a cellular signaling hub

(2010) Pablo Leivar et al.   TRENDS IN PLANT SCIENCE

Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers

(2009) Patricia Hornitschek et al.   EMBO JOURNAL

Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis

(2009) L.-Y. Zhang et al.   PLANT CELL

Definition of Early Transcriptional Circuitry Involved in Light-Induced Reversal of PIF-Imposed Repression of Photomorphogenesis in Young Arabidopsis Seedlings

(2009) P. Leivar et al.   PLANT CELL

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks

(2009) K. Vandepoele et al.   PLANT PHYSIOLOGY

Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants

(2008) Yi Tao et al.   CELL

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

(2008) Hideki Goda et al.   PLANT JOURNAL

A small plant-specific protein family of ABI five binding proteins (AFPs) regulates stress response in germinating Arabidopsis seeds and seedlings

(2008) Mary Emily Garcia et al.   PLANT MOLECULAR BIOLOGY

BSKs Mediate Signal Transduction from the Receptor Kinase BRI1 in Arabidopsis

(2008) W. Tang et al.   SCIENCE