The PhytoClust tool for metabolic gene clusters discovery in plant genomes

Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants

(2017) Pascal Schläpfer et al.   PLANT PHYSIOLOGY

Plant metabolic clusters - from genetics to genomics

(2016) Hans-Wilhelm Nützmann et al.   NEW PHYTOLOGIST

A Metabolic Gene Cluster in the WheatW1and the BarleyCer-cquLoci Determines β-Diketone Biosynthesis and Glaucousness

(2016) Shelly Hen-Avivi et al.   PLANT CELL

Engineering of Secondary Metabolism

(2015) Sarah E. O'Connor   Annual Review of Genetics

Gramene 2016: comparative plant genomics and pathway resources

(2015) Marcela K. Tello-Ruiz et al.   NUCLEIC ACIDS RESEARCH

Ensembl Genomes 2016: more genomes, more complexity

(2015) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

Differential metabolic and coexpression networks of plant metabolism

(2015) Nooshin Omranian et al.   TRENDS IN PLANT SCIENCE

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

(2014) Noe Fernandez-Pozo et al.   NUCLEIC ACIDS RESEARCH

Production of Bioactive Diterpenoids in the Euphorbiaceae Depends on Evolutionarily Conserved Gene Clusters

(2014) A. J. King et al.   PLANT CELL

Investigation of terpene diversification across multiple sequenced plant genomes

(2014) Alexander M. Boutanaev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Signatures of Specialized Metabolism in Plants

(2014) L. Chae et al.   SCIENCE

Biosynthesis, regulation, and domestication of bitterness in cucumber

(2014) Y. Shang et al.   SCIENCE

The rise of operon-like gene clusters in plants

(2014) Svetlana Boycheva et al.   TRENDS IN PLANT SCIENCE

Gene clustering in plant specialized metabolism

(2013) Hans-Wilhelm Nützmann et al.   CURRENT OPINION IN BIOTECHNOLOGY

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Evolution of a Complex Locus for Terpene Biosynthesis in Solanum

(2013) Y. Matsuba et al.   PLANT CELL

Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes

(2013) M. Itkin et al.   SCIENCE

Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes

(2012) Masayoshi Wada et al.   GENE

A Papaver somniferum 10-Gene Cluster for Synthesis of the Anticancer Alkaloid Noscapine

(2012) T. Winzer et al.   SCIENCE

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

(2011) Yutaka Sato et al.   BMC PLANT BIOLOGY

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

From hormones to secondary metabolism: the emergence of metabolic gene clusters in plants

(2011) Hoi Yee Chu et al.   PLANT JOURNAL

A P450-centric view of plant evolution

(2011) David Nelson et al.   PLANT JOURNAL

Formation of plant metabolic gene clusters within dynamic chromosomal regions

(2011) B. Field et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Engineering for the Production of Natural Products

(2011) Lauren B. Pickens et al.   Annual Review of Chemical and Biomolecular Engineering

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Nature's chemicals. The natural products that shaped our world

(2010) Michael B. Jackson   ANNALS OF BOTANY

Gene Clusters for Secondary Metabolic Pathways: An Emerging Theme in Plant Biology

(2010) A. Osbourn   PLANT PHYSIOLOGY

Elucidation of the Final Reactions of DIMBOA-Glucoside Biosynthesis in Maize: Characterization of Bx6 and Bx7

(2008) R. Jonczyk et al.   PLANT PHYSIOLOGY

Metabolic Diversification--Independent Assembly of Operon-Like Gene Clusters in Different Plants

(2008) B. Field et al.   SCIENCE