Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame

HIV-1 sequences isolated from patients promote expression of shorter isoforms of the Gag polyprotein

(2016) Christelle Daudé et al.   ARCHIVES OF VIROLOGY

Does HIV-1 mRNA 5'-untranslated region bear an internal ribosome entry site?

(2016) Victoria V. Smirnova et al.   BIOCHIMIE

Structural domains within the HIV-1 mRNA and the ribosomal protein S25 influence cap-independent translation initiation

(2016) Felipe Carvajal et al.   FEBS Journal

Polypyrimidine tract-binding protein binds to the 5′ untranslated region of the mouse mammary tumor virus mRNA and stimulates cap-independent translation initiation

(2016) Carlos J. Cáceres et al.   FEBS Journal

Attachment of ribosomal complexes and retrograde scanning during initiation on the Halastavi árva virus IRES

(2016) Irina S. Abaeva et al.   NUCLEIC ACIDS RESEARCH

LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex

(2015) Jenniffer Angulo et al.   NUCLEIC ACIDS RESEARCH

Translational Control of the HIV Unspliced Genomic RNA

(2015) Bárbara Rojas-Araya et al.   Viruses-Basel

HIV-1 Replication and the Cellular Eukaryotic Translation Apparatus

(2015) Santiago Guerrero et al.   Viruses-Basel

Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution

(2015) Nick Quade et al.   Nature Communications

Initiation of Translation by Cricket Paralysis Virus IRES Requires Its Translocation in the Ribosome

(2014) Israel S. Fernández et al.   CELL

The 5' Untranslated Region of the Human T-Cell Lymphotropic Virus Type 1 mRNA Enables Cap-Independent Translation Initiation

(2014) E. Olivares et al.   JOURNAL OF VIROLOGY

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

(2014) Nathan A Siegfried et al.   NATURE METHODS

Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA

(2014) Hiroshi Yamamoto et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

40S recruitment in the absence of eIF4G/4A by EMCV IRES refines the model for translation initiation on the archetype of Type II IRESs

(2014) Nathalie Chamond et al.   NUCLEIC ACIDS RESEARCH

HIV-1 Transcripts Use IRES-Initiation under Conditions Where Cap-Dependent Translation Is Restricted by Poliovirus 2A Protease

(2014) Raquel Amorim et al.   PLoS One

Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center

(2014) C. S. Koh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional analysis of Kaposi's sarcoma–associated herpesvirus vFLIP expression reveals a new mode of IRES-mediated translation

(2014) Zulkefley Othman et al.   RNA

The mechanism of translation initiation on Type 1 picornavirus IRESs

(2013) Trevor R Sweeney et al.   EMBO JOURNAL

Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit

(2013) Yaser Hashem et al.   NATURE

Cell type specificity and structural determinants of IRES activity from the 5′ leaders of different HIV-1 transcripts

(2013) Terra-Dawn M. Plank et al.   NUCLEIC ACIDS RESEARCH

The DEAD-box helicase DDX3 substitutes for the cap-binding protein eIF4E to promote compartmentalized translation initiation of the HIV-1 genomic RNA

(2013) Ricardo Soto-Rifo et al.   NUCLEIC ACIDS RESEARCH

Dual Mechanisms of Translation Initiation of the Full-Length HIV-1 mRNA Contribute to Gag Synthesis

(2013) Anne Monette et al.   PLoS One

DEAD-box protein DDX3 associates with eIF4F to promote translation of selected mRNAs

(2012) Ricardo Soto-Rifo et al.   EMBO JOURNAL

In vitrostudies reveal that different modes of initiation on HIV-1 mRNA have different levels of requirement for eukaryotic initiation factor 4F

(2012) Sylvain de Breyne et al.   FEBS Journal

Fingerprinting Noncanonical and Tertiary RNA Structures by Differential SHAPE Reactivity

(2012) Kady-Ann Steen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

R- chie : a web server and R package for visualizing RNA secondary structures

(2012) Daniel Lai et al.   NUCLEIC ACIDS RESEARCH

Translation initiation is driven by different mechanisms on the HIV-1 and HIV-2 genomic RNAs

(2012) Sylvain de Breyne et al.   VIRUS RESEARCH

Thriving under Stress: Selective Translation of HIV-1 Structural Protein mRNA during Vpr-Mediated Impairment of eIF4E Translation Activity

(2012) Amit Sharma et al.   PLoS Pathogens

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by IRES trans-acting factors

(2011) M. Vallejos et al.   NUCLEIC ACIDS RESEARCH

CTL Escape Mediated by Proteasomal Destruction of an HIV-1 Cryptic Epitope

(2011) Sylvain Cardinaud et al.   PLoS Pathogens

Trinucleotide repeat system for sequence specificity analysis of RNA structure probing reagents

(2010) Krzysztof Sobczak et al.   ANALYTICAL BIOCHEMISTRY

The different pathways of HIV genomic RNA translation

(2010) Nathalie Chamond et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The activity of the HIV-1 IRES is stimulated by oxidative stress and controlled by a negative regulatory element

(2010) Karine Gendron et al.   NUCLEIC ACIDS RESEARCH

A conserved structure within the HIV gag open reading frame that controls translation initiation directly recruits the 40S subunit and eIF3

(2010) Nicolas Locker et al.   NUCLEIC ACIDS RESEARCH

Architecture and secondary structure of an entire HIV-1 RNA genome

(2009) Joseph M. Watts et al.   NATURE

A new type of IRES within gag coding region recruits three initiation complexes on HIV-2 genomic RNA

(2009) Laure Weill et al.   NUCLEIC ACIDS RESEARCH

The 5'-untranslated region of the mouse mammary tumor virus mRNA exhibits cap-independent translation initiation

(2009) M. Vallejos et al.   NUCLEIC ACIDS RESEARCH

RNA helicase A modulates translation of HIV-1 and infectivity of progeny virions

(2009) Cheryl Bolinger et al.   NUCLEIC ACIDS RESEARCH

Direct functional interaction of initiation factor eIF4G with type 1 internal ribosomal entry sites

(2009) S. de Breyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved RNA secondary structure prediction by maximizing expected pair accuracy

(2009) Z. J. Lu et al.   RNA

Lentiviral RNAs can use different mechanisms for translation initiation

(2008) Emiliano P. Ricci et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

RNA secondary structure of the feline immunodeficiency virus 5′UTR and Gag coding region

(2008) Laurie James et al.   NUCLEIC ACIDS RESEARCH

Poly(A) leader of eukaryotic mRNA bypasses the dependence of translation on initiation factors

(2008) N. E. Shirokikh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vitro expression of the HIV-2 genomic RNA is controlled by three distinct internal ribosome entry segments that are regulated by the HIV protease and the Gag polyprotein

(2008) E. P. Ricci et al.   RNA

The secondary structure of the 5' end of the FIV genome reveals a long-range interaction between R/U5 and gag sequences, and a large, stable stem-loop

(2008) J. C. Kenyon et al.   RNA

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

(2008) Kevin A Wilkinson et al.   PLOS BIOLOGY