LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex

mRNAs that specifically interact with eukaryotic ribosomal subunits

(2015) Jules Deforges et al.   BIOCHIMIE

Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution

(2015) Nick Quade et al.   Nature Communications

Structural insights into viral IRES-dependent translation mechanisms

(2015) Gloria Lozano et al.   Current Opinion in Virology

Initiation of Translation by Cricket Paralysis Virus IRES Requires Its Translocation in the Ribosome

(2014) Israel S. Fernández et al.   CELL

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

(2014) Nathan A Siegfried et al.   NATURE METHODS

Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA

(2014) Hiroshi Yamamoto et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

40S recruitment in the absence of eIF4G/4A by EMCV IRES refines the model for translation initiation on the archetype of Type II IRESs

(2014) Nathalie Chamond et al.   NUCLEIC ACIDS RESEARCH

Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site

(2014) Gabriele Fuchs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center

(2014) C. S. Koh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo

(2014) D. Matsuda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations

(2014) Egor Svidritskiy et al.   STRUCTURE

The mechanism of translation initiation on Type 1 picornavirus IRESs

(2013) Trevor R Sweeney et al.   EMBO JOURNAL

The genetic code as expressed through relationships between mRNA structure and protein function

(2013) David M. Mauger et al.   FEBS LETTERS

Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit

(2013) Yaser Hashem et al.   NATURE

End-to-end crosstalk within the hepatitis C virus genome mediates the conformational switch of the 3′X-tail region

(2013) Cristina Romero-López et al.   NUCLEIC ACIDS RESEARCH

HCV IRES interacts with the 18S rRNA to activate the 40S ribosome for subsequent steps of translation initiation

(2013) A. A. Malygin et al.   NUCLEIC ACIDS RESEARCH

Structural investigation of HIV-1 genomic RNA dimerization process reveals a role for the Major Splice-site Donor stem loop

(2012) Jules Deforges et al.   BIOCHIMIE

‘Ribozoomin’ – Translation Initiation from the Perspective of the Ribosome-bound Eukaryotic Initiation Factors (eIFs)

(2012) Leos Shivaya Valasek   CURRENT PROTEIN & PEPTIDE SCIENCE

Fingerprinting Noncanonical and Tertiary RNA Structures by Differential SHAPE Reactivity

(2012) Kady-Ann Steen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation

(2012) Megan E Filbin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The folding of the hepatitis C virus internal ribosome entry site depends on the 3′-end of the viral genome

(2012) Cristina Romero-López et al.   NUCLEIC ACIDS RESEARCH

Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures

(2012) Eda Koculi et al.   NUCLEIC ACIDS RESEARCH

QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis

(2012) F. Karabiber et al.   RNA

eIF2A mediates translation of hepatitis C viral mRNA under stress conditions

(2011) Joon Hyun Kim et al.   EMBO JOURNAL

The mechanism of translation initiation on Aichivirus RNA mediated by a novel type of picornavirus IRES

(2011) Yingpu Yu et al.   EMBO JOURNAL

HCV IRES domain IIb affects the configuration of coding RNA in the 40S subunit's decoding groove

(2011) M. E. Filbin et al.   RNA

Crystal Structure of the HCV IRES Central Domain Reveals Strategy for Start-Codon Positioning

(2011) Katherine E. Berry et al.   STRUCTURE

The different pathways of HIV genomic RNA translation

(2010) Nathalie Chamond et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels

(2010) F. Jossinet et al.   BIOINFORMATICS

Activities of Ligatin and MCT-1/DENR in eukaryotic translation initiation and ribosomal recycling

(2010) M. A. Skabkin et al.   GENES & DEVELOPMENT

GTP-independent tRNA Delivery to the Ribosomal P-site by a Novel Eukaryotic Translation Factor

(2010) Sergey E. Dmitriev et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A conserved structure within the HIV gag open reading frame that controls translation initiation directly recruits the 40S subunit and eIF3

(2010) Nicolas Locker et al.   NUCLEIC ACIDS RESEARCH

The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit

(2010) K. E. Berry et al.   RNA

Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1

(2010) J. Rabl et al.   SCIENCE

IRES-induced conformational changes in the ribosome and the mechanism of translation initiation by internal ribosomal entry

(2009) Christopher U.T. Hellen   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Structural and functional diversity of viral IRESes

(2009) Laurent Balvay et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Internal translation initiation of picornaviruses and hepatitis C virus

(2009) Michael Niepmann   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

A new type of IRES within gag coding region recruits three initiation complexes on HIV-2 genomic RNA

(2009) Laure Weill et al.   NUCLEIC ACIDS RESEARCH

A fast selenium derivatization strategy for crystallization and phasing of RNA structures

(2009) V. Olieric et al.   RNA

A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome

(2009) C. Romero-Lopez et al.   RNA

eIF2-dependent and eIF2-independent modes of initiation on the CSFV IRES: a common role of domain II

(2008) Tatyana V Pestova et al.   EMBO JOURNAL

Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2

(2008) Ilya M Terenin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

RNA secondary structure of the feline immunodeficiency virus 5′UTR and Gag coding region

(2008) Laurie James et al.   NUCLEIC ACIDS RESEARCH

Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation

(2008) M. I. Barria et al.   NUCLEIC ACIDS RESEARCH