Pathview Web: user friendly pathway visualization and data integration
Published 2017 View Full Article
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Title
Pathview Web: user friendly pathway visualization and data integration
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 45, Issue W1, Pages W501-W508
Publisher
Oxford University Press (OUP)
Online
2017-04-25
DOI
10.1093/nar/gkx372
References
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Related references
Note: Only part of the references are listed.- KEGG: new perspectives on genomes, pathways, diseases and drugs
- (2016) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- MetaboAnalyst 3.0—making metabolomics more meaningful
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- Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
- (2015) Zachary A. King et al. PLoS Computational Biology
- PathVisio 3: An Extendable Pathway Analysis Toolbox
- (2015) Martina Kutmon et al. PLoS Computational Biology
- Pathview: an R/Bioconductor package for pathway-based data integration and visualization
- (2013) Weijun Luo et al. BIOINFORMATICS
- VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
- (2013) Zhenjun Hu et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
- (2013) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
- (2012) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
- (2011) Atanas Kamburov et al. BIOINFORMATICS
- WikiPathways: building research communities on biological pathways
- (2011) T. Kelder et al. NUCLEIC ACIDS RESEARCH
- iPath2.0: interactive pathway explorer
- (2011) Takuji Yamada et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- Pathway Commons, a web resource for biological pathway data
- (2010) E. G. Cerami et al. NUCLEIC ACIDS RESEARCH
- Reactome: a database of reactions, pathways and biological processes
- (2010) D. Croft et al. NUCLEIC ACIDS RESEARCH
- Early Dysregulation of Cell Adhesion and Extracellular Matrix Pathways in Breast Cancer Progression
- (2009) Lyndsey A. Emery et al. AMERICAN JOURNAL OF PATHOLOGY
- GAGE: generally applicable gene set enrichment for pathway analysis
- (2009) Weijun Luo et al. BMC BIOINFORMATICS
- Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API
- (2009) Nobuaki Kono et al. PLoS One
- A novel signaling pathway impact analysis
- (2008) Adi Laurentiu Tarca et al. BIOINFORMATICS
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