Contrasting silencing mechanisms of the same target mRNA by two regulatory RNAs in Escherichia coli

Identification of unknown RNA partners using MAPS

(2017) David Lalaouna et al.   METHODS

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

(2017) Yanjie Chao et al.   MOLECULAR CELL

Envelope Stress Responses: An Interconnected Safety Net

(2017) Marcin Grabowicz et al.   TRENDS IN BIOCHEMICAL SCIENCES

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E

(2016) Shafagh A Waters et al.   EMBO JOURNAL

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo

(2016) Erik Holmqvist et al.   EMBO JOURNAL

Global Mapping of Small RNA-Target Interactions in Bacteria

(2016) Sahar Melamed et al.   MOLECULAR CELL

A 3′ UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response

(2016) Yanjie Chao et al.   MOLECULAR CELL

GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation

(2016) Kook Han et al.   Nature Microbiology

The spectrum of activity of the small RNA DsrA: not so narrow after all

(2015) David Lalaouna et al.   CURRENT GENETICS

Alternative Hfq-sRNA interaction modes dictate alternative mRNA recognition

(2015) D. J. Schu et al.   EMBO JOURNAL

A 3′ External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise

(2015) David Lalaouna et al.   MOLECULAR CELL

DsrA regulatory RNA represses bothhnsandrbsDmRNAs through distinct mechanisms inEscherichia coli

(2015) David Lalaouna et al.   MOLECULAR MICROBIOLOGY

Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress

(2015) Maksym Bobrovskyy et al.   MOLECULAR MICROBIOLOGY

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer inSalmonella

(2015) Kai Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing

(2015) Steven T. Rutherford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division

(2015) Andrew N Gray et al.   eLife

The Cpx Envelope Stress Response Regulates and Is Regulated by Small Noncoding RNAs

(2014) S. L. Vogt et al.   JOURNAL OF BACTERIOLOGY

Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity

(2014) Neil Peterman et al.   NUCLEIC ACIDS RESEARCH

Curli synthesis and biofilm formation in enteric bacteria are controlled by a dynamic small RNA module made up of a pseudoknot assisted by an RNA chaperone

(2014) Valérie Bordeau et al.   NUCLEIC ACIDS RESEARCH

P2CS: updates of the prokaryotic two-component systems database

(2014) Philippe Ortet et al.   NUCLEIC ACIDS RESEARCH

A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureus

(2014) Alex Eyraud et al.   NUCLEIC ACIDS RESEARCH

CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

(2014) Patrick R. Wright et al.   NUCLEIC ACIDS RESEARCH

Small RNAs in the control of RpoS, CsgD, and biofilm architecture ofEscherichia coli

(2014) Franziska Mika et al.   RNA Biology

Regulatory RNAs and target mRNA decay in prokaryotes

(2013) David Lalaouna et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The sRNA RyhB Regulates the Synthesis of the Escherichia coli Methionine Sulfoxide Reductase MsrB but Not MsrA

(2013) Julia Bos et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq

(2012) G. Desnoyers et al.   GENES & DEVELOPMENT

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA

(2012) Colin P. Corcoran et al.   MOLECULAR MICROBIOLOGY

Targeting of csgD by the small regulatory RNA RprA links stationary phase, biofilm formation and cell envelope stress in Escherichia coli

(2012) Franziska Mika et al.   MOLECULAR MICROBIOLOGY

Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling

(2012) Donghyuk Kim et al.   PLoS Genetics

Histidine kinases and response regulators in networks

(2011) Kirsten Jung et al.   CURRENT OPINION IN MICROBIOLOGY

Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage

(2011) K. Prevost et al.   GENES & DEVELOPMENT

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli

(2010) Yoshiki Ikeda et al.   MOLECULAR MICROBIOLOGY

A Staphylococcus aureus Small RNA Is Required for Bacterial Virulence and Regulates the Expression of an Immune-Evasion Molecule

(2010) Svetlana Chabelskaya et al.   PLoS Pathogens

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Feedback Inhibition in the PhoQ/PhoP Signaling System by a Membrane Peptide

(2009) Andrew M. Lippa et al.   PLoS Genetics

The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior

(2008) N. De Lay et al.   JOURNAL OF BACTERIOLOGY

Signal Integration by the Two-Component Signal Transduction Response Regulator CpxR

(2008) A. J. Wolfe et al.   JOURNAL OF BACTERIOLOGY

Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP–CRP- and σE-Dependent CyaR–ompX Regulatory Case

(2008) Jesper Johansen et al.   JOURNAL OF MOLECULAR BIOLOGY

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

(2008) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

(2008) T. J. Soper et al.   RNA