GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation
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Title
GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation
Authors
Keywords
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Journal
Nature Microbiology
Volume 2, Issue 3, Pages -
Publisher
Springer Nature
Online
2016-12-24
DOI
10.1038/nmicrobiol.2016.239
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- (2014) Monica P. Hui et al. Annual Review of Genetics
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