Protein turnover in plant biology

Metaproteomic Identification of Diazotrophic Methanotrophs and Their Localization in Root Tissues of Field-Grown Rice Plants

(2014) Zhihua Bao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The link between transcript regulation and de novo protein synthesis in the retrograde high light acclimation response of Arabidopsis thaliana

(2014) Marie-Luise Oelze et al.   BMC GENOMICS

Drought adaptation of stay-green sorghum is associated with canopy development, leaf anatomy, root growth, and water uptake

(2014) Andrew K. Borrell et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Rice Embryos during Early Stages of Germination

(2014) Chao Han et al.   JOURNAL OF PROTEOME RESEARCH

The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis

(2014) Cosette Abdallah et al.   Journal of Proteomics

Protein Abundance Changes and Ubiquitylation Targets Identified after Inhibition of the Proteasome with Syringolin A

(2014) Julia Svozil et al.   MOLECULAR & CELLULAR PROTEOMICS

Coordinated regulation of protein synthesis and degradation by mTORC1

(2014) Yinan Zhang et al.   NATURE

Poly(A)-tail profiling reveals an embryonic switch in translational control

(2014) Alexander O. Subtelny et al.   NATURE

Plant ubiquitin ligases as signaling hubs

(2014) Nitzan Shabek et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Repression of Jasmonate-Dependent Defenses by Shade Involves Differential Regulation of Protein Stability of MYC Transcription Factors and Their JAZ Repressors in Arabidopsis

(2014) J.-M. Chico et al.   PLANT CELL

COP1 and phyB Physically Interact with PIL1 to Regulate Its Stability and Photomorphogenic Development in Arabidopsis

(2014) Q. Luo et al.   PLANT CELL

Drought stress provokes the down-regulation of methionine and ethylene biosynthesis pathways inMedicago truncatularoots and nodules

(2014) ESTÍBALIZ LARRAINZAR et al.   PLANT CELL AND ENVIRONMENT

The Arabidopsis mitochondrial membrane-bound ubiquitin protease UBP27 contributes to mitochondrial morphogenesis

(2014) Ronghui Pan et al.   PLANT JOURNAL

Proteins with High Turnover Rate in Barley Leaves Estimated by Proteome Analysis Combined with in Planta Isotope Labeling

(2014) Clark J. Nelson et al.   PLANT PHYSIOLOGY

The Role of Target of Rapamycin Signaling Networks in Plant Growth and Metabolism

(2014) Y. Xiong et al.   PLANT PHYSIOLOGY

Glutamate dehydrogenase isoenzyme 3 (GDH3) of Arabidopsis thaliana is less thermostable than GDH1 and GDH2 isoenzymes

(2014) Laura Marchi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions

(2014) Daniel J. Gibbs et al.   TRENDS IN CELL BIOLOGY

Arabidopsis DELLA Protein Degradation Is Controlled by a Type-One Protein Phosphatase, TOPP4

(2014) Qianqian Qin et al.   PLoS Genetics

E3 Ubiquitin Ligase CHIP and NBR1-Mediated Selective Autophagy Protect Additively against Proteotoxicity in Plant Stress Responses

(2014) Jie Zhou et al.   PLoS Genetics

Emerging roles for diverse intramembrane proteases in plant biology

(2013) Zach Adam   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Moving beyond translation: Glucose-TOR signaling in the transcriptional control of cell cycle

(2013) Yan Xiong et al.   CELL CYCLE

Proteomics Analysis Reveals a Highly Heterogeneous Proteasome Composition and the Post-translational Regulation of Peptidase Activity under Pathogen Signaling in Plants

(2013) Hui H. Sun et al.   JOURNAL OF PROTEOME RESEARCH

Degradation Rate of Mitochondrial Proteins in Arabidopsis thaliana Cells

(2013) Clark J. Nelson et al.   JOURNAL OF PROTEOME RESEARCH

Dynamic Proteomics Emphasizes the Importance of Selective mRNA Translation and Protein Turnover duringArabidopsisSeed Germination

(2013) Marc Galland et al.   MOLECULAR & CELLULAR PROTEOMICS

Glucose–TOR signalling reprograms the transcriptome and activates meristems

(2013) Yan Xiong et al.   NATURE

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features

(2013) Yiliang Ding et al.   NATURE

Advanced Proteomic Analyses Yield a Deep Catalog of Ubiquitylation Targets inArabidopsis

(2013) Do-Young Kim et al.   PLANT CELL

Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant

(2013) S. K. Pal et al.   PLANT PHYSIOLOGY

Autophagy Contributes to Nighttime Energy Availability for Growth in Arabidopsis

(2013) M. Izumi et al.   PLANT PHYSIOLOGY

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

(2013) P. Juntawong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein quality control in organelles — AAA/FtsH story

(2012) Hanna Janska et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Accumulation of Newly Synthesized F1in VivoinArabidopsisMitochondria Provides Evidence for Modular Assembly of the Plant F1FoATP Synthase

(2012) Lei Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Subcomplexes of Ancestral Respiratory Complex I Subunits Rapidly Turn Overin Vivoas Productive Assembly Intermediates inArabidopsis

(2012) Lei Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis

(2012) Joshua M. Edwards et al.   JOURNAL OF EXPERIMENTAL BOTANY

Absolute Quantitation of Isoforms of Post-translationally Modified Proteins in Transgenic Organism

(2012) Yaojun Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation inArabidopsis

(2012) Marcus J. Miller et al.   MOLECULAR & CELLULAR PROTEOMICS

Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis

(2012) Christopher M. Rose et al.   MOLECULAR & CELLULAR PROTEOMICS

Source-sink dynamics and proteomic reprogramming under elevated night temperature and their impact on rice yield and grain quality

(2012) Wanju Shi et al.   NEW PHYTOLOGIST

Chloroplast Biogenesis Is Regulated by Direct Action of the Ubiquitin-Proteasome System

(2012) Q. Ling et al.   SCIENCE

Thylakoid protein phosphorylation in dynamic regulation of photosystem II in higher plants

(2011) Mikko Tikkanen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Comparative proteomic study reveals dynamic proteome changes between superhybrid rice LYP9 and its parents at different developmental stages

(2011) Chunyan Zhang et al.   JOURNAL OF PLANT PHYSIOLOGY

A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells

(2011) François-Michel Boisvert et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteolytic system of plant mitochondria

(2011) Malgorzata Kwasniak et al.   PHYSIOLOGIA PLANTARUM

The dynamic state of protein turnover: It's about time

(2011) Izumi V. Hinkson et al.   TRENDS IN CELL BIOLOGY

Expression profiling and proteomic analysis of isolated photosynthetic cells of the non-Kranz C4speciesBienertia sinuspersici

(2010) Joonho Park et al.   FUNCTIONAL PLANT BIOLOGY

Modification-specific proteomics in plant biology

(2010) A. Jimmy Ytterberg et al.   Journal of Proteomics

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

(2010) W. Majeran et al.   PLANT CELL

Measuring the turnover rates of Arabidopsis proteins using deuterium oxide: an auxin signaling case study

(2010) Xiao-Yuan Yang et al.   PLANT JOURNAL

Analysis of proteome dynamics in the mouse brain

(2010) J. C. Price et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential turnover of the photosystem II reaction centre D1 protein in mesophyll and bundle sheath chloroplasts of maize

(2009) Berenika Pokorska et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Advances in protein turnover analysis at the global level and biological insights

(2009) Qingbo Li   MASS SPECTROMETRY REVIEWS

The ubiquitin/26S proteasome system in plant-pathogen interactions: a never-ending hide-and-seek game

(2009) ANNE-SOPHIE DIELEN et al.   MOLECULAR PLANT PATHOLOGY

Consequences of C4Differentiation for Chloroplast Membrane Proteomes in Maize Mesophyll and Bundle Sheath Cells

(2008) Wojciech Majeran et al.   MOLECULAR & CELLULAR PROTEOMICS

Functional Differentiation ofBrassica napusGuard Cells and Mesophyll Cells Revealed by Comparative Proteomics

(2008) Mengmeng Zhu et al.   MOLECULAR & CELLULAR PROTEOMICS

Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways

(2008) Z. Zhao et al.   PLANT CELL

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE