Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita

Gall-forming root-knot nematodes hijack key plant cellular functions to induce multinucleate and hypertrophied feeding cells

(2016) Bruno Favery et al.   JOURNAL OF INSECT PHYSIOLOGY

Arabidopsis miR827 mediates post-transcriptional gene silencing of its ubiquitin E3 ligase target gene in the syncytium of the cyst nematodeHeterodera schachtiito enhance susceptibility

(2016) Tarek Hewezi et al.   PLANT JOURNAL

A Reliable Protocol for In situ microRNAs Detection in Feeding Sites Induced by Root-Knot Nematodes

(2016) Fernando E. Díaz-Manzano et al.   Frontiers in Plant Science

Small RNAs — the secret agents in the plant–pathogen interactions

(2015) Arne Weiberg et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification of jasmonic acid-associated microRNAs and characterization of the regulatory roles of the miR319/TCP4 module under root-knot nematode stress in tomato

(2015) Wenchao Zhao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differentially expressed small RNAs in Arabidopsis galls formed byMeloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs

(2015) Javier Cabrera et al.   NEW PHYTOLOGIST

Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis

(2015) Gang Liang et al.   Scientific Reports

miRNA regulation of nutrient homeostasis in plants

(2015) Soumitra Paul et al.   Frontiers in Plant Science

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

(2015) Maria Barciszewska-Pacak et al.   Frontiers in Plant Science

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Plant Development: Small RNAs and the Metamorphosis of Leaves

(2014) Daniel H. Chitwood et al.   CURRENT BIOLOGY

miRNAs in the crosstalk between phytohormone signalling pathways

(2014) J. Curaba et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Rfam 12.0: updates to the RNA families database

(2014) Eric P. Nawrocki et al.   NUCLEIC ACIDS RESEARCH

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots

(2013) Hongli Ji et al.   JOURNAL OF EXPERIMENTAL BOTANY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

miR396 affects mycorrhization and root meristem activity in the legumeMedicago truncatula

(2013) Jérémie Bazin et al.   PLANT JOURNAL

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Nematode-Induced Endoreduplication in Plant Host Cells: Why and How?

(2012) Janice de Almeida Engler et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transcriptional reprogramming by root knot and migratory nematode infection in rice

(2012) Tina Kyndt et al.   NEW PHYTOLOGIST

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

(2012) A. Carbonell et al.   PLANT CELL

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

MicroRNA159 Can Act as a Switch or Tuning MicroRNA Independently of Its Abundance in Arabidopsis

(2012) Maria M. Alonso-Peral et al.   PLoS One

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing

(2012) Xiaoyan Li et al.   PLoS One

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

(2011) Xiaoming Zhang et al.   MOLECULAR CELL

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Small RNA Diversity in Plants and its Impact in Development

(2009) Christine Lelandais-Briere et al.   CURRENT GENOMICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialisation

(2008) Vivian C. Blok et al.   BIOESSAYS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

MAP65-3 Microtubule-Associated Protein Is Essential for Nematode-Induced Giant Cell Ontogenesis in Arabidopsis

(2008) M.-C. Caillaud et al.   PLANT CELL