Differentially expressed small RNAs in Arabidopsis galls formed byMeloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs

Identification of jasmonic acid-associated microRNAs and characterization of the regulatory roles of the miR319/TCP4 module under root-knot nematode stress in tomato

(2015) Wenchao Zhao et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Methylome of Soybean Roots during the Compatible Interaction with the Soybean Cyst Nematode

(2015) Aditi Rambani et al.   PLANT PHYSIOLOGY

Small RNAs: A New Paradigm in Plant-Microbe Interactions

(2014) Arne Weiberg et al.   Annual Review of Phytopathology

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Small regulatory RNAs and the fine-tuning of plant-bacteria interactions

(2014) Lamia Harfouche et al.   NEW PHYTOLOGIST

A role forLATERAL ORGAN BOUNDARIES-DOMAIN 16during the interaction Arabidopsis-Meloidogynespp. provides a molecular link between lateral root and root-knot nematode feeding site development

(2014) Javier Cabrera et al.   NEW PHYTOLOGIST

Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode

(2014) D. E. Cook et al.   PLANT PHYSIOLOGY

Supervised Learning Classification Models for Prediction of Plant Virus Encoded RNA Silencing Suppressors

(2014) Zeenia Jagga et al.   PLoS One

Novel MiRNA and PhasiRNA Biogenesis Networks in Soybean Roots from Two Sister Lines That Are Resistant and Susceptible to SCN Race 4

(2014) Miaoyun Xu et al.   PLoS One

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Altered sucrose synthase and invertase expression affects the local and systemic sugar metabolism of nematode-infected Arabidopsis thaliana plants

(2013) Susana Cabello et al.   JOURNAL OF EXPERIMENTAL BOTANY

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis

(2013) Xiyan Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

NEMATIC: a simple and versatile tool for thein silicoanalysis of plant-nematode interactions

(2013) Javier Cabrera et al.   MOLECULAR PLANT PATHOLOGY

Distinct and conserved transcriptomic changes during nematode-induced giant cell development in tomato compared with Arabidopsis: a functional role for gene repression

(2013) Mary Portillo et al.   NEW PHYTOLOGIST

Locus-Specific Requirements of DDR Complexes for Gene-Body Methylation of TAS Genes in Arabidopsis thaliana

(2013) Tatsuo Kanno et al.   PLANT MOLECULAR BIOLOGY REPORTER

The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs

(2013) S. Nuthikattu et al.   PLANT PHYSIOLOGY

Synergistic Interaction of CLAVATA1, CLAVATA2, and RECEPTOR-LIKE PROTEIN KINASE 2 in Cyst Nematode Parasitism of Arabidopsis

(2012) Amy Replogle et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Roles of DICER-LIKE and ARGONAUTE Proteins in TAS-Derived Small Interfering RNA-Triggered DNA Methylation

(2012) L. Wu et al.   PLANT PHYSIOLOGY

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

Identification of Soybean MicroRNAs Involved in Soybean Cyst Nematode Infection by Deep Sequencing

(2012) Xiaoyan Li et al.   PLoS One

Identification of Nitrogen Starvation-Responsive MicroRNAs in Arabidopsis thaliana

(2012) Gang Liang et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Plant Small RNAs: Biogenesis, Mode of Action and Their Roles in Abiotic Stresses

(2012) Praveen Guleria et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

(2011) Meng Zhao et al.   NEW PHYTOLOGIST

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

MicroRNA and proliferation control in chronic lymphocytic leukemia: functional relationship between miR-221/222 cluster and p27

(2010) M. Frenquelli et al.   BLOOD

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Transcriptional Control of Gene Expression by MicroRNAs

(2010) Basel Khraiwesh et al.   CELL

Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis

(2010) Hanna Lee et al.   NUCLEIC ACIDS RESEARCH

Global analysis of microRNA in Arabidopsis in response to phosphate starvation as studied by locked nucleic acid-based microarrays

(2010) Maria Lundmark et al.   PHYSIOLOGIA PLANTARUM

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Nematode CLE signaling in Arabidopsis requires CLAVATA2 and CORYNE

(2010) Amy Replogle et al.   PLANT JOURNAL

Syncytium gene expression in Glycine max[PI 88788] roots undergoing a resistant reaction to the parasitic nematode Heterodera glycines

(2010) Vincent P. Klink et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Repression of transposable-elements – a microRNA anti-cancer defense mechanism?

(2010) Reut Shalgi et al.   TRENDS IN GENETICS

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Isolation of RNA from laser-capture-microdissected giant cells at early differentiation stages suitable for differential transcriptome analysis

(2009) MARY PORTILLO et al.   MOLECULAR PLANT PATHOLOGY

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

Early transcriptomic events in microdissected Arabidopsis nematode-induced giant cells

(2009) Marta Barcala et al.   PLANT JOURNAL

A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode)

(2009) Vincent P. Klink et al.   PLANT MOLECULAR BIOLOGY

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing

(2009) J. T. Cuperus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Root-knot nematodes manipulate plant cell functions during a compatible interaction

(2007) Marie-Cécile Caillaud et al.   JOURNAL OF PLANT PHYSIOLOGY