Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots

Effect of plant elicitors on the reproduction of the root-knot nematode Meloidogyne chitwoodi on susceptible hosts

(2013) M. C. Vieira dos Santos et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Distinct and conserved transcriptomic changes during nematode-induced giant cell development in tomato compared with Arabidopsis: a functional role for gene repression

(2013) Mary Portillo et al.   NEW PHYTOLOGIST

Ethylene Signaling Pathway Modulates Attractiveness of Host Roots to the Root-Knot NematodeMeloidogyne hapla

(2012) Sylwia L. Fudali et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transcriptional reprogramming by root knot and migratory nematode infection in rice

(2012) Tina Kyndt et al.   NEW PHYTOLOGIST

Gibberellin indirectly promotes chloroplast biogenesis as a means to maintain the chloroplast population of expanded cells

(2012) Xingshan Jiang et al.   PLANT JOURNAL

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

Analysis of Gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways

(2011) Heba MM Ibrahim et al.   BMC GENOMICS

How nematodes manipulate plant development pathways for infection

(2011) Godelieve Gheysen et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice

(2011) T. Kyndt et al.   PLANT BIOLOGY

The Jasmonate Pathway Is a Key Player in Systemically Induced Defense against Root Knot Nematodes in Rice

(2011) Kamrun Nahar et al.   PLANT PHYSIOLOGY

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

(2010) Thomas J Hardcastle et al.   BMC BIOINFORMATICS

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

(2010) G. Zhang et al.   GENOME RESEARCH

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene Expression in Arabidopsis

(2010) Caroline Servet et al.   Molecular Plant

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

(2010) Junli Zhou et al.   PLANT MOLECULAR BIOLOGY

Trehalose and plant stress responses: friend or foe?

(2010) Olivier Fernandez et al.   TRENDS IN PLANT SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Isolation of RNA from laser-capture-microdissected giant cells at early differentiation stages suitable for differential transcriptome analysis

(2009) MARY PORTILLO et al.   MOLECULAR PLANT PATHOLOGY

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

Early transcriptomic events in microdissected Arabidopsis nematode-induced giant cells

(2009) Marta Barcala et al.   PLANT JOURNAL

Functional characterization of transcripts expressed in early-stageMeloidogyne javanica-induced giant cells isolated by laser microdissection

(2008) JOHN FOSU-NYARKO et al.   MOLECULAR PLANT PATHOLOGY

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

(2008) Brian T. Wilhelm et al.   NATURE

Chlorophyll fluorescence emission spectrum inside a leaf

(2008) Roberto Pedrós et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

The transcriptome of syncytia induced by the cyst nematodeHeterodera schachtiiin Arabidopsis roots

(2008) Dagmar Szakasits et al.   PLANT JOURNAL

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE