Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks

Express or repress? The transcriptional dilemma of damaged chromatin

(2017) Ilaria Capozzo et al.   FEBS Journal

Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damage

(2017) Kaspar Burger et al.   JOURNAL OF CELL BIOLOGY

A damaged genome’s transcriptional landscape through multilayered expression profiling around in situ-mapped DNA double-strand breaks

(2017) Fabio Iannelli et al.   Nature Communications

DNA damage response inhibition at dysfunctional telomeres by modulation of telomeric DNA damage response RNAs

(2017) Francesca Rossiello et al.   Nature Communications

Resolving Subcellular miRNA Trafficking and Turnover at Single-Molecule Resolution

(2017) Sethuramasundaram Pitchiaya et al.   Cell Reports

Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway

(2017) Daisuke Miki et al.   Scientific Reports

Small RNAs Recruit Chromatin-Modifying Enzymes MMSET and Tip60 to Reconfigure Damaged DNA upon Double-Strand Break and Facilitate Repair

(2016) Qinhong Wang et al.   CANCER RESEARCH

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair

(2016) Corina Ohle et al.   CELL

DICER, DROSHA and DNA damage response RNAs are necessary for the secondary recruitment of DNA damage response factors

(2016) Sofia Francia et al.   JOURNAL OF CELL SCIENCE

Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants

(2016) Yiping Qi et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide

(2016) Takayuki Nojima et al.   Nature Protocols

Homology directed repair is unaffected by the absence of siRNAs inDrosophila melanogaster

(2016) Ines Schmidts et al.   NUCLEIC ACIDS RESEARCH

Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut

(2016) N. J. Proudfoot   SCIENCE

Classical non-homologous end-joining pathway utilizes nascent RNA for error-free double-strand break repair of transcribed genes

(2016) Anirban Chakraborty et al.   Nature Communications

Multiomic Analysis of the UV-Induced DNA Damage Response

(2016) Stefan Boeing et al.   Cell Reports

Writers, Readers, and Erasers of Histone Ubiquitylation in DNA Double-Strand Break Repair

(2016) Godelieve Smeenk et al.   Frontiers in Genetics

RNA-directed repair of DNA double-strand breaks

(2015) Yun-Gui Yang et al.   DNA REPAIR

RNA-mediated epigenetic regulation of gene expression

(2015) Daniel Holoch et al.   NATURE REVIEWS GENETICS

RNA–RNA interactions in gene regulation: the coding and noncoding players

(2015) Sonia Guil et al.   TRENDS IN BIOCHEMICAL SCIENCES

Ago2 facilitates Rad51 recruitment and DNA double-strand break repair by homologous recombination

(2014) Min Gao et al.   CELL RESEARCH

RIF1: A novel regulatory factor for DNA replication and DNA damage response signaling

(2014) Ramesh Kumar et al.   DNA REPAIR

Nuclear position dictates DNA repair pathway choice

(2014) Charlène Lemaître et al.   GENES & DEVELOPMENT

Requirement for PBAF in Transcriptional Repression and Repair at DNA Breaks in Actively Transcribed Regions of Chromatin

(2014) Andreas Kakarougkas et al.   MOLECULAR CELL

R-loops induce repressive chromatin marks over mammalian gene terminators

(2014) Konstantina Skourti-Stathaki et al.   NATURE

Transcript-RNA-templated DNA recombination and repair

(2014) Havva Keskin et al.   NATURE

DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal

(2014) Sébastien Britton et al.   NUCLEIC ACIDS RESEARCH

Super-resolution microscopy reveals decondensed chromatin structure at transcription sites

(2014) Yejun Wang et al.   Scientific Reports

Rescuing dicer Defects via Inhibition of an Anti-Dicing Nuclease

(2014) Ken Asada et al.   Cell Reports

Non-coding RNAs in DNA damage and repair

(2013) Vivek Sharma et al.   FEBS LETTERS

Dissecting non-coding RNA mechanisms in cellulo by Single-molecule High-Resolution Localization and Counting

(2013) Sethuramasundaram Pitchiaya et al.   METHODS

53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark

(2013) Amélie Fradet-Turcotte et al.   NATURE

Spatial Dynamics of Chromosome Translocations in Living Cells

(2013) V. Roukos et al.   SCIENCE

A Role for Small RNAs in DNA Double-Strand Break Repair

(2012) Wei Wei et al.   CELL

Intracellular single molecule microscopy reveals two kinetically distinct pathways for microRNA assembly

(2012) Sethuramasundaram Pitchiaya et al.   EMBO REPORTS

The Heterochromatic Barrier to DNA Double Strand Break Repair: How to Get the Entry Visa

(2012) Aaron A. Goodarzi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Site-specific DICER and DROSHA RNA products control the DNA-damage response

(2012) Sofia Francia et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks

(2012) Tibor Pankotai et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A small RNA response at DNA ends in Drosophila

(2012) Katharina M. Michalik et al.   NUCLEIC ACIDS RESEARCH

The nucleoporin 153, a novel factor in double-strand break repair and DNA damage response

(2012) C Lemaître et al.   ONCOGENE

Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modifications

(2011) S. E. Polo et al.   GENES & DEVELOPMENT

High-resolution profiling of γH2AX around DNA double strand breaks in the mammalian genome

(2010) Jason S Iacovoni et al.   EMBO JOURNAL

TERRA biogenesis, turnover and implications for function

(2010) Sascha Feuerhahn et al.   FEBS LETTERS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A forward chemical genetic screen reveals an inhibitor of the Mre11–Rad50–Nbs1 complex

(2008) Aude Dupré et al.   Nature Chemical Biology

Imaging individual mRNA molecules using multiple singly labeled probes

(2008) Arjun Raj et al.   NATURE METHODS