Nucleosome–Chd1 structure and implications for chromatin remodelling

Interdomain Communication of the Chd1 Chromatin Remodeler across the DNA Gyres of the Nucleosome

(2017) Ilana M. Nodelman et al.   MOLECULAR CELL

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1

(2017) Jan Bednar et al.   MOLECULAR CELL

Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure

(2017) Xiaoyu Liu et al.   NATURE

Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses

(2017) Shijie C Zheng et al.   NATURE METHODS

A glimpse into chromatin remodeling

(2017) Dale B Wigley et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Distortion of histone octamer core promotes nucleosome mobilization by a chromatin remodeler

(2017) Kalyan K. Sinha et al.   SCIENCE

Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex

(2017) Youwei Xu et al.   Nature Communications

A glimpse into chromatin remodeling

(2017) Dale B Wigley et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural reorganization of the chromatin remodeling enzyme Chd1 upon engagement with nucleosomes

(2017) Ramasubramanian Sundaramoorthy et al.   eLife

The Chromatin Remodelling Protein CHD1 Contains a Previously Unrecognised C-Terminal Helical Domain

(2016) Biswaranjan Mohanty et al.   JOURNAL OF MOLECULAR BIOLOGY

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

Structure and regulation of the chromatin remodeller ISWI

(2016) Lijuan Yan et al.   NATURE

Transcription initiation complex structures elucidate DNA opening

(2016) C. Plaschka et al.   NATURE

The Chd1 chromatin remodeler can sense both entry and exit sides of the nucleosome

(2016) Ilana M. Nodelman et al.   NUCLEIC ACIDS RESEARCH

Architecture and RNA binding of the human negative elongation factor

(2016) Seychelle M Vos et al.   eLife

Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

(2016) Dari Kimanius et al.   eLife

Nucleosome Spacing Generated by ISWI and CHD1 Remodelers Is Constant Regardless of Nucleosome Density

(2015) Corinna Lieleg et al.   MOLECULAR AND CELLULAR BIOLOGY

A Nucleotide-Driven Switch Regulates Flanking DNA Length Sensing by a Dimeric Chromatin Remodeler

(2015) John D. Leonard et al.   MOLECULAR CELL

Structural basis for retroviral integration into nucleosomes

(2015) Daniel P. Maskell et al.   NATURE

Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo

(2015) Amanda L. Hughes et al.   G3-Genes Genomes Genetics

The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1

(2014) Peter J Skene et al.   eLife

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes

(2012) Matthieu Le Gallo et al.   NATURE GENETICS

Crystal Structure of the Chromodomain Helicase DNA-binding Protein 1 (Chd1) DNA-binding Domain in Complex with DNA

(2011) Amit Sharma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Bayesian View on Cryo-EM Structure Determination

(2011) Sjors H.W. Scheres   JOURNAL OF MOLECULAR BIOLOGY

Extranucleosomal DNA Binding Directs Nucleosome Sliding by Chd1

(2011) J. N. McKnight et al.   MOLECULAR AND CELLULAR BIOLOGY

Recurrent deletion of CHD1 in prostate cancer with relevance to cell invasiveness

(2011) S Huang et al.   ONCOGENE

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Crystal Structures of Nucleosome Core Particles Containing the ‘601’ Strong Positioning Sequence

(2010) Dileep Vasudevan et al.   JOURNAL OF MOLECULAR BIOLOGY

The Chromodomains of the Chd1 Chromatin Remodeler Regulate DNA Access to the ATPase Motor

(2010) Glenn Hauk et al.   MOLECULAR CELL

Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism

(2010) M. Gu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Mechanistic Basis of 5′-3′ Translocation in SF1B Helicases

(2009) Kayarat Saikrishnan et al.   CELL

Running in Reverse: The Structural Basis for Translocation Polarity in Hexameric Helicases

(2009) Nathan D. Thomsen et al.   CELL

Chd1 regulates open chromatin and pluripotency of embryonic stem cells

(2009) Alexandre Gaspar-Maia et al.   NATURE

Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics

(2008) Leonardo G. Trabuco et al.   STRUCTURE