Architecture and RNA binding of the human negative elongation factor
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Title
Architecture and RNA binding of the human negative elongation factor
Authors
Keywords
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Journal
eLife
Volume 5, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2016-06-10
DOI
10.7554/elife.14981
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- (2015) Andreas Mayer et al. CELL
- xiNET: Cross-link Network Maps With Residue Resolution
- (2015) Colin W. Combe et al. MOLECULAR & CELLULAR PROTEOMICS
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- The I-TASSER Suite: protein structure and function prediction
- (2015) Jianyi Yang et al. NATURE METHODS
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- Structural basis of transcription initiation by RNA polymerase II
- (2015) Sarah Sainsbury et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Getting up to speed with transcription elongation by RNA polymerase II
- (2015) Iris Jonkers et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A positioned +1 nucleosome enhances promoter-proximal pausing
- (2015) Silvia Jimeno-González et al. NUCLEIC ACIDS RESEARCH
- Enhancer RNA Facilitates NELF Release from Immediate Early Genes
- (2014) Katie Schaukowitch et al. MOLECULAR CELL
- A pause sequence enriched at translation start sites drives transcription dynamics in vivo
- (2014) M. H. Larson et al. SCIENCE
- Interactions between RNA polymerase and the "core recognition element" counteract pausing
- (2014) I. O. Vvedenskaya et al. SCIENCE
- Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes
- (2014) Bernd Stadelmayer et al. Nature Communications
- DSIF and NELF interact with Integrator to specify the correct post-transcriptional fate of snRNA genes
- (2014) Junichi Yamamoto et al. Nature Communications
- Defining NELF-E RNA Binding in HIV-1 and Promoter-Proximal Pause Regions
- (2014) John M. Pagano et al. PLoS Genetics
- AFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter
- (2014) Ursula Schulze-Gahmen et al. eLife
- Control of Transcriptional Elongation
- (2013) Hojoong Kwak et al. Annual Review of Genetics
- Negative Elongation Factor (NELF) Coordinates RNA Polymerase II Pausing, Premature Termination, and Chromatin Remodeling to Regulate HIV Transcription
- (2013) Malini Natarajan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Kinetic Competition between Elongation Rate and Binding of NELF Controls Promoter-Proximal Pausing
- (2013) Jian Li et al. MOLECULAR CELL
- Stable Pausing by RNA Polymerase II Provides an Opportunity to Target and Integrate Regulatory Signals
- (2013) Telmo Henriques et al. MOLECULAR CELL
- Transcriptional and Posttranscriptional Regulation of HIV-1 Gene Expression
- (2013) J. Karn et al. Cold Spring Harbor Perspectives in Medicine
- The AFF4 scaffold binds human P-TEFb adjacent to HIV Tat
- (2013) Ursula Schulze-Gahmen et al. eLife
- Structural basis of transcription elongation
- (2012) Fuensanta W. Martinez-Rucobo et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Transcription elongation factors DSIF and NELF: Promoter-proximal pausing and beyond
- (2012) Yuki Yamaguchi et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin inDictyostelium
- (2012) Gue Su Chang et al. GENOME RESEARCH
- R-Loop Formation Is a Distinctive Characteristic of Unmethylated Human CpG Island Promoters
- (2012) Paul A. Ginno et al. MOLECULAR CELL
- False discovery rate estimation for cross-linked peptides identified by mass spectrometry
- (2012) Thomas Walzthoeni et al. NATURE METHODS
- Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry
- (2012) F. Herzog et al. SCIENCE
- Linking Crystallographic Model and Data Quality
- (2012) P. A. Karplus et al. SCIENCE
- The CDK9 Tail Determines the Reaction Pathway of Positive Transcription Elongation Factor b
- (2012) Sonja Baumli et al. STRUCTURE
- The Control of HIV Transcription: Keeping RNA Polymerase II on Track
- (2011) Melanie Ott et al. Cell Host & Microbe
- Promoter proximal pausing and the control of gene expression
- (2011) Jian Li et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity
- (2011) Fuensanta W Martinez-Rucobo et al. EMBO JOURNAL
- Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
- (2011) I. M. Min et al. GENES & DEVELOPMENT
- Transcriptional Regulation inSaccharomyces cerevisiae: Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and Coactivators
- (2011) Steven Hahn et al. GENETICS
- XDS
- (2010) Wolfgang Kabsch ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Pausing of RNA Polymerase II Disrupts DNA-Specified Nucleosome Organization to Enable Precise Gene Regulation
- (2010) Daniel A. Gilchrist et al. CELL
- Promoter-proximal pausing and its release: Molecular mechanisms and physiological functions
- (2010) Kunitoshi Chiba et al. EXPERIMENTAL CELL RESEARCH
- Crystal structure of the human symplekin–Ssu72–CTD phosphopeptide complex
- (2010) Kehui Xiang et al. NATURE
- Crystal structure of HIV-1 Tat complexed with human P-TEFb
- (2010) Tahir H. Tahirov et al. NATURE
- Dali server: conservation mapping in 3D
- (2010) Liisa Holm et al. NUCLEIC ACIDS RESEARCH
- RNA polymerase and transcription elongation factor Spt4/5 complex structure
- (2010) B. J. Klein et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex
- (2010) A. Missra et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MolProbity: all-atom structure validation for macromolecular crystallography
- (2009) Vincent B. Chen et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- Progression through the RNA Polymerase II CTD Cycle
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- NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
- (2008) D. A. Gilchrist et al. GENES & DEVELOPMENT
- Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
- (2008) D. A. Hendrix et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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