Structural reorganization of the chromatin remodeling enzyme Chd1 upon engagement with nucleosomes

Interdomain Communication of the Chd1 Chromatin Remodeler across the DNA Gyres of the Nucleosome

(2017) Ilana M. Nodelman et al.   MOLECULAR CELL

Structural Information from Single-molecule FRET Experiments Using the Fast Nano-positioning System

(2017) Thilo Dörfler et al.   Jove-Journal of Visualized Experiments

The Chromatin Remodelling Protein CHD1 Contains a Previously Unrecognised C-Terminal Helical Domain

(2016) Biswaranjan Mohanty et al.   JOURNAL OF MOLECULAR BIOLOGY

Methods to account for movement and flexibility in cryo-EM data processing

(2016) S. Rawson et al.   METHODS

Structure of chromatin remodeler Swi2/Snf2 in the resting state

(2016) Xian Xia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The histone chaperone Vps75 forms multiple oligomeric assemblies capable of mediating exchange between histone H3–H4 tetramers and Asf1–H3–H4 complexes

(2016) Colin M. Hammond et al.   NUCLEIC ACIDS RESEARCH

Establishment of a promoter-based chromatin architecture on recently replicated DNA can accommodate variable inter-nucleosome spacing

(2016) Ross T. Fennessy et al.   NUCLEIC ACIDS RESEARCH

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

(2016) Josefina Ocampo et al.   NUCLEIC ACIDS RESEARCH

Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines

(2016) Alexander Leitner et al.   TRENDS IN BIOCHEMICAL SCIENCES

Structure of chromatin remodeler Swi2/Snf2 in the resting state

(2016) Xian Xia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Alignment of cryo-EM movies of individual particles by optimization of image translations

(2015) John L. Rubinstein et al.   JOURNAL OF STRUCTURAL BIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

A Nucleotide-Driven Switch Regulates Flanking DNA Length Sensing by a Dimeric Chromatin Remodeler

(2015) John D. Leonard et al.   MOLECULAR CELL

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints

(2015) Maximilian Grimm et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo

(2015) Amanda L. Hughes et al.   G3-Genes Genomes Genetics

Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering

(2015) Giancarlo Tria et al.   IUCrJ

Human CHD2 Is a Chromatin Assembly ATPase Regulated by Its Chromo- and DNA-binding Domains

(2014) Jessica C. Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Histone H4 tail mediates allosteric regulation of nucleosome remodelling by linker DNA

(2014) William L. Hwang et al.   NATURE

Rapid Purification of Recombinant Histones

(2014) Henrike Klinker et al.   PLoS One

TagDock: An Efficient Rigid Body Docking Algorithm for Oligomeric Protein Complex Model Construction and Experiment Planning

(2013) Jarrod A. Smith et al.   BIOCHEMISTRY

ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps

(2013) Sebastian Deindl et al.   CELL

Real-time observation of the conformational dynamics of mitochondrial Hsp70 by spFRET

(2013) Martin Sikor et al.   EMBO JOURNAL

Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains

(2013) Swetansu K Hota et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers

(2012) Kuangyu Yen et al.   CELL

Beam-induced motion of vitrified specimen on holey carbon film

(2012) Axel F. Brilot et al.   JOURNAL OF STRUCTURAL BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Dynamic Architecture of a Minimal RNA Polymerase II Open Promoter Complex

(2012) Barbara Treutlein et al.   MOLECULAR CELL

A Functional Evolutionary Approach to Identify Determinants of Nucleosome Positioning: A Unifying Model for Establishing the Genome-wide Pattern

(2012) Amanda L. Hughes et al.   MOLECULAR CELL

Regulation of ISWI involves inhibitory modules antagonized by nucleosomal epitopes

(2012) Cedric R. Clapier et al.   NATURE

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast

(2012) Tali Raveh-Sadka et al.   NATURE GENETICS

The ATPase domain of ISWI is an autonomous nucleosome remodeling machine

(2012) Felix Mueller-Planitz et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

(2012) Michaela Smolle et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Decoupling nucleosome recognition from DNA binding dramatically alters the properties of the Chd1 chromatin remodeler

(2012) Ashok Patel et al.   NUCLEIC ACIDS RESEARCH

Movies of Ice-Embedded Particles Enhance Resolution in Electron Cryo-Microscopy

(2012) Melody G. Campbell et al.   STRUCTURE

A Key Role for Chd1 in Histone H3 Dynamics at the 3′ Ends of Long Genes in Yeast

(2012) Marta Radman-Livaja et al.   PLoS Genetics

Structural insights into regulation and action of SWI2/SNF2 ATPases

(2011) Glenn Hauk et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The DNA-binding domain of the Chd1 chromatin-remodelling enzyme contains SANT and SLIDE domains

(2011) Daniel P Ryan et al.   EMBO JOURNAL

Mechanisms for ATP-dependent chromatin remodelling: the means to the end

(2011) Andrew Flaus et al.   FEBS Journal

Crystal Structure of the Chromodomain Helicase DNA-binding Protein 1 (Chd1) DNA-binding Domain in Complex with DNA

(2011) Amit Sharma et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CrossWork: Software-assisted identification of cross-linked peptides

(2011) Morten I. Rasmussen et al.   Journal of Proteomics

Extranucleosomal DNA Binding Directs Nucleosome Sliding by Chd1

(2011) J. N. McKnight et al.   MOLECULAR AND CELLULAR BIOLOGY

Structure and mechanism of the chromatin remodelling factor ISW1a

(2011) Kazuhiro Yamada et al.   NATURE

Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP

(2011) Petra Wollmann et al.   NATURE

A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization

(2011) T. Gkikopoulos et al.   SCIENCE

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

(2011) Z. Zhang et al.   SCIENCE

The Chromodomains of the Chd1 Chromatin Remodeler Regulate DNA Access to the ATPase Motor

(2010) Glenn Hauk et al.   MOLECULAR CELL

The Role of Nucleosome Positioning in the Evolution of Gene Regulation

(2010) Alexander M. Tsankov et al.   PLOS BIOLOGY

On the Mechanism of Trolox as Antiblinking and Antibleaching Reagent

(2009) Thorben Cordes et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Conformational Changes Associated with Template Commitment in ATP-Dependent Chromatin Remodeling by ISW2

(2009) Vamsi K. Gangaraju et al.   MOLECULAR CELL

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes

(2009) Lisa R. Racki et al.   NATURE

Dynamics of nucleosome remodelling by individual ACF complexes

(2009) Timothy R. Blosser et al.   NATURE

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

A nano-positioning system for macromolecular structural analysis

(2008) Adam Muschielok et al.   NATURE METHODS

Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle

(2008) Robert Lewis et al.   NUCLEIC ACIDS RESEARCH