Structural basis for ArfA–RF2-mediated translation termination on mRNAs lacking stop codons

The stringent factor RelA adopts an open conformation on the ribosome to stimulate ppGpp synthesis

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CTFFIND4: Fast and accurate defocus estimation from electron micrographs

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Structure of the E. coli ribosome–EF-Tu complex at

(2015) Niels Fischer et al.   NATURE

Mechanisms of ribosome rescue in bacteria

(2015) Kenneth C. Keiler   NATURE REVIEWS MICROBIOLOGY

Peptide release promoted by methylated RF2 and ArfA in nonstop translation is achieved by an induced-fit mechanism

(2015) Fuxing Zeng et al.   RNA

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

(2015) Alan Brown et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

ArfA recognizes the lack of mRNA in the mRNA channel after RF2 binding for ribosome rescue

(2014) Daisuke Kurita et al.   NUCLEIC ACIDS RESEARCH

Translational stalling at polyproline stretches is modulated by the sequence context upstream of the stall site

(2014) Agata L. Starosta et al.   NUCLEIC ACIDS RESEARCH

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM

(2013) Xueming Li et al.   NATURE METHODS

Crystal structures of 70S ribosomes bound to release factors RF1, RF2 and RF3

(2012) Jie Zhou et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structural view on recycling of archaeal and eukaryotic ribosomes after canonical termination and ribosome rescue

(2012) Sibylle Franckenberg et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Proteobacterial ArfA Peptides Are Synthesized from Non-stop Messenger RNAs

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ArfA Recruits RF2 into Stalled Ribosomes

(2012) Yoshihiro Shimizu   JOURNAL OF MOLECULAR BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis inEscherichia coli

(2012) Yuhei Chadani et al.   MOLECULAR MICROBIOLOGY

Structural Basis for the Rescue of Stalled Ribosomes: Structure of YaeJ Bound to the Ribosome

(2012) M. G. Gagnon et al.   SCIENCE

Decoding in the Absence of a Codon by tmRNA and SmpB in the Ribosome

(2012) C. Neubauer et al.   SCIENCE

trans-translation-mediated tight regulation of the expression of the alternative ribosome-rescue factor ArfA in Escherichia coli

(2011) Yuhei Chadani et al.   GENES & GENETIC SYSTEMS

tmRNA regulates synthesis of the ArfA ribosome rescue factor

(2011) Fernando Garza-Sánchez et al.   MOLECULAR MICROBIOLOGY

Escherichia coli YaeJ protein mediates a novel ribosome-rescue pathway distinct from SsrA- and ArfA-mediated pathways

(2011) Yuhei Chadani et al.   MOLECULAR MICROBIOLOGY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

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Visualizing the transfer-messenger RNA as the ribosome resumes translation

(2010) Jie Fu et al.   EMBO JOURNAL

tmRNA–SmpB: a journey to the centre of the bacterial ribosome

(2010) Félix Weis et al.   EMBO JOURNAL

Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans-translation system

(2010) Yuhei Chadani et al.   MOLECULAR MICROBIOLOGY

Structural aspects of messenger RNA reading frame maintenance by the ribosome

(2010) Lasse B Jenner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Peptide Release on the Ribosome: Mechanism and Implications for Translational Control

(2008) Elaine M. Youngman et al.   Annual Review of Microbiology

Crystal structure of a translation termination complex formed with release factor RF2

(2008) A. Korostelev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome

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